Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043047 | Potato | cytosol | 74.66 | 89.67 |
| Solyc03g042550.1.1 | Tomato | nucleus | 97.29 | 59.72 |
| Solyc03g034460.2.1 | Tomato | nucleus | 95.02 | 58.33 |
| Solyc03g042520.1.1 | Tomato | nucleus | 78.28 | 55.81 |
| Solyc03g034450.2.1 | Tomato | nucleus | 85.07 | 47.96 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 13.12 | 31.87 |
| KRH42263 | Soybean | nucleus | 39.82 | 27.5 |
| KRH58384 | Soybean | nucleus | 39.37 | 27.19 |
| AT5G37910.1 | Thale cress | nucleus | 30.77 | 24.64 |
| CDY01699 | Canola | nucleus, plastid | 31.22 | 24.47 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 30.32 | 24.36 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 29.41 | 24.16 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 21.72 | 24.0 |
| CDY12498 | Canola | nucleus | 29.41 | 23.9 |
| CDY25763 | Canola | nucleus | 28.96 | 23.53 |
| AT5G37870.1 | Thale cress | nucleus | 29.86 | 23.49 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 26.7 | 23.41 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 28.05 | 23.31 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 30.77 | 23.21 |
| Bra018266.1-P | Field mustard | plastid | 30.32 | 23.18 |
| CDY10787 | Canola | plastid | 30.32 | 23.18 |
| Bra012354.1-P | Field mustard | cytosol | 28.51 | 23.16 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 28.96 | 23.1 |
| CDY11709 | Canola | nucleus | 17.19 | 23.03 |
| Bra000425.1-P | Field mustard | nucleus | 29.41 | 22.97 |
| Bra022858.1-P | Field mustard | nucleus | 31.22 | 22.7 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 28.96 | 22.7 |
| CDY01757 | Canola | cytosol | 5.43 | 22.64 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 28.05 | 22.63 |
| CDX99687 | Canola | nucleus | 28.96 | 22.61 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 29.86 | 22.6 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 28.05 | 22.55 |
| CDY52473 | Canola | nucleus | 28.96 | 22.54 |
| AT1G66620.1 | Thale cress | nucleus | 31.22 | 22.04 |
| AT5G37890.1 | Thale cress | nucleus | 28.51 | 22.03 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 27.6 | 21.94 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 26.7 | 21.93 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 27.15 | 21.9 |
| Bra025434.1-P | Field mustard | nucleus | 28.05 | 21.83 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 17.65 | 21.79 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 26.24 | 21.64 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 19.46 | 21.5 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 20.81 | 21.5 |
| Bra028395.1-P | Field mustard | nucleus | 31.22 | 21.3 |
| CDY47873 | Canola | nucleus | 31.22 | 21.3 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 28.51 | 21.21 |
| AT5G37900.1 | Thale cress | nucleus | 23.08 | 21.16 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 26.24 | 21.09 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 28.05 | 21.09 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 25.34 | 21.05 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 25.79 | 20.8 |
| CDY01695 | Canola | nucleus | 28.96 | 20.71 |
| CDY27008 | Canola | nucleus | 30.77 | 20.67 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 25.34 | 20.44 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 25.79 | 20.28 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 24.89 | 20.07 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 27.6 | 19.87 |
| Bra004174.1-P | Field mustard | nucleus | 31.67 | 19.83 |
| AT1G66630.1 | Thale cress | cytosol | 27.15 | 19.8 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 31.22 | 19.77 |
| AT1G66650.1 | Thale cress | nucleus | 29.41 | 19.76 |
| KXG37941 | Sorghum | cytosol | 24.89 | 19.64 |
| OQU86453 | Sorghum | cytosol | 19.0 | 19.63 |
| Bra004402.1-P | Field mustard | nucleus | 28.05 | 19.56 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 24.89 | 19.5 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 24.89 | 19.5 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 26.24 | 19.4 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 26.24 | 19.33 |
| Solyc02g069880.2.1 | Tomato | cytosol | 17.65 | 19.31 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 23.08 | 19.25 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 25.34 | 19.18 |
| CDY36209 | Canola | plastid | 18.1 | 18.96 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 23.98 | 18.93 |
| KXG32009 | Sorghum | nucleus | 25.34 | 18.92 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 26.24 | 18.89 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 25.34 | 18.86 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 24.89 | 18.84 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 23.98 | 18.79 |
| AT5G62800.1 | Thale cress | nucleus | 29.41 | 18.68 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 23.98 | 18.66 |
| AT5G37930.1 | Thale cress | nucleus | 29.41 | 18.62 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 24.89 | 18.52 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 24.89 | 18.52 |
| TraesCSU01G045900.1 | Wheat | cytosol | 24.89 | 18.39 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 20.36 | 18.22 |
| Bra004176.1-P | Field mustard | nucleus | 27.6 | 18.1 |
| CDX96138 | Canola | nucleus | 27.6 | 17.94 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 24.43 | 17.94 |
| Zm00001d041049_P001 | Maize | nucleus | 26.24 | 17.74 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 23.08 | 17.59 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 26.24 | 17.52 |
| Solyc10g080570.1.1 | Tomato | cytosol | 23.98 | 17.49 |
| OQU78944 | Sorghum | nucleus | 25.79 | 17.48 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 23.53 | 17.33 |
| CDY70665 | Canola | nucleus | 25.34 | 17.28 |
| TraesCS1A01G070000.1 | Wheat | plastid | 19.0 | 17.28 |
| Bra019710.1-P | Field mustard | nucleus | 26.7 | 17.25 |
| CDY36211 | Canola | nucleus | 28.05 | 17.17 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 26.24 | 17.11 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 20.81 | 17.1 |
| Solyc10g009420.2.1 | Tomato | nucleus | 24.43 | 17.09 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 25.79 | 16.96 |
| OQU77422 | Sorghum | cytosol | 21.72 | 16.78 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.89 | 16.77 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 26.7 | 16.76 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 25.34 | 16.72 |
| Solyc03g083270.2.1 | Tomato | cytosol | 23.53 | 16.61 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 24.89 | 16.57 |
| Solyc01g006190.2.1 | Tomato | cytosol | 23.08 | 16.56 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 24.43 | 16.51 |
| Solyc06g051980.2.1 | Tomato | cytosol | 23.53 | 16.51 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 23.53 | 16.51 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 24.89 | 16.18 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 24.89 | 16.18 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 24.89 | 16.13 |
| AT1G66610.1 | Thale cress | nucleus | 26.7 | 16.12 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 25.79 | 15.92 |
| KXG32014 | Sorghum | nucleus | 15.84 | 15.91 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 24.43 | 15.88 |
| Solyc05g050580.2.1 | Tomato | nucleus | 23.53 | 15.71 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 19.91 | 15.44 |
| EES00387 | Sorghum | nucleus | 22.17 | 15.36 |
| Solyc01g096020.2.1 | Tomato | cytosol | 23.08 | 15.32 |
| AT1G66660.2 | Thale cress | nucleus | 23.98 | 15.23 |
| EES17731 | Sorghum | nucleus | 23.53 | 15.03 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 17.19 | 15.02 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 25.34 | 15.01 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 19.0 | 15.0 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 19.0 | 14.95 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 25.34 | 14.93 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 25.34 | 14.93 |
| HORVU2Hr1G118840.1 | Barley | plastid | 24.89 | 14.82 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 23.98 | 14.52 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 23.98 | 14.52 |
| TraesCSU01G021700.1 | Wheat | nucleus | 23.98 | 14.52 |
| OQU77425 | Sorghum | nucleus | 24.43 | 14.36 |
| TraesCSU01G231400.1 | Wheat | nucleus | 22.17 | 14.16 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 22.62 | 14.12 |
| KXG21322 | Sorghum | nucleus | 22.62 | 13.37 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 23.08 | 13.35 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 27.6 | 13.29 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 27.15 | 13.16 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 27.6 | 13.15 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 19.0 | 12.73 |
| EES17735 | Sorghum | mitochondrion | 22.62 | 11.14 |
| EES02574 | Sorghum | nucleus | 21.72 | 10.71 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 19.0 | 10.37 |
| CDY01758 | Canola | cytosol | 16.29 | 8.24 |
| Solyc06g017910.1.1 | Tomato | cytosol | 3.17 | 8.05 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 2.71 | 6.06 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:K4BFW7 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | EnsemblPlantsGene:Solyc03g036460.1 | EnsemblPlants:Solyc03g036460.1.1 |
| InterPro:TRAF-like | UniParc:UPI0002767DA4 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:K4BFW7]
Coordinates
chr3:+:6450215..6450963
Molecular Weight (calculated)
24721.0 Da
IEP (calculated)
8.386
GRAVY (calculated)
-0.128
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIRCGNGHI ACAPCCIKIA NKCPSCCLPI GYNRCRAMEN VLESLKVSCV NNRYGCKEIL NLSKKTDHEN ACIYVPCFCP SHGCDFIGTS AKVYAHFSKK
101: HASSAEHISF NAVHPIYIEK DQRYIILQMR TEGILFIVNH ASDRVGSAIN IICVGQARQK RRFSYKLVVT DGESSFKLES VAESVPNWSE DSPMKKFLVV
201: PKDVVNSSAR LKLDVLIEEK E
101: HASSAEHISF NAVHPIYIEK DQRYIILQMR TEGILFIVNH ASDRVGSAIN IICVGQARQK RRFSYKLVVT DGESSFKLES VAESVPNWSE DSPMKKFLVV
201: PKDVVNSSAR LKLDVLIEEK E
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.