Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G005260.1 | Barley | cytosol | 20.3 | 59.34 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 62.41 | 58.87 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 63.53 | 57.68 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 62.41 | 56.85 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 58.27 | 56.57 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 57.14 | 55.27 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 55.64 | 53.24 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 52.26 | 51.67 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 50.38 | 48.73 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 46.24 | 45.9 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 47.37 | 45.49 |
| KXG32009 | Sorghum | nucleus | 39.85 | 35.81 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 35.71 | 35.71 |
| KXG37941 | Sorghum | cytosol | 33.46 | 31.79 |
| CDY11709 | Canola | nucleus | 19.17 | 30.91 |
| EES00387 | Sorghum | nucleus | 34.59 | 28.84 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 34.59 | 28.13 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.31 | 28.05 |
| OQU77422 | Sorghum | cytosol | 29.7 | 27.62 |
| AT5G37870.1 | Thale cress | nucleus | 28.57 | 27.05 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 35.71 | 26.84 |
| CDY12498 | Canola | nucleus | 27.07 | 26.47 |
| Bra012354.1-P | Field mustard | cytosol | 26.69 | 26.1 |
| CDY25763 | Canola | nucleus | 26.69 | 26.1 |
| EES17731 | Sorghum | nucleus | 33.83 | 26.01 |
| KXG21322 | Sorghum | nucleus | 36.47 | 25.94 |
| OQU86453 | Sorghum | cytosol | 20.68 | 25.7 |
| CDY36209 | Canola | plastid | 20.3 | 25.59 |
| OQU77425 | Sorghum | nucleus | 36.09 | 25.53 |
| Bra025434.1-P | Field mustard | nucleus | 27.07 | 25.35 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 25.56 | 25.28 |
| CDY01699 | Canola | nucleus, plastid | 26.69 | 25.18 |
| AT1G66630.1 | Thale cress | cytosol | 28.57 | 25.08 |
| KXG32014 | Sorghum | nucleus | 20.68 | 25.0 |
| CDY52473 | Canola | nucleus | 26.69 | 25.0 |
| AT5G37890.1 | Thale cress | nucleus | 26.32 | 24.48 |
| CDX99687 | Canola | nucleus | 25.94 | 24.38 |
| Bra000425.1-P | Field mustard | nucleus | 25.94 | 24.38 |
| PGSC0003DMT400043047 | Potato | cytosol | 16.54 | 23.91 |
| AT5G37910.1 | Thale cress | nucleus | 24.81 | 23.91 |
| KRH42263 | Soybean | nucleus | 28.57 | 23.75 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.67 | 23.5 |
| KXG32011 | Sorghum | cytosol | 21.43 | 23.46 |
| KRH58384 | Soybean | nucleus | 28.2 | 23.44 |
| Bra022858.1-P | Field mustard | nucleus | 26.69 | 23.36 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 25.56 | 23.13 |
| AT1G66620.1 | Thale cress | nucleus | 27.07 | 23.0 |
| KXG32010 | Sorghum | extracellular | 21.05 | 22.86 |
| CDY10787 | Canola | plastid | 24.81 | 22.84 |
| Bra018266.1-P | Field mustard | plastid | 24.81 | 22.84 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 24.81 | 22.22 |
| Bra028395.1-P | Field mustard | nucleus | 26.69 | 21.91 |
| CDY47873 | Canola | nucleus | 26.69 | 21.91 |
| CDY27008 | Canola | nucleus | 26.69 | 21.58 |
| Bra004174.1-P | Field mustard | nucleus | 28.57 | 21.53 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 28.2 | 21.49 |
| Bra004402.1-P | Field mustard | nucleus | 25.56 | 21.45 |
| OQU86460 | Sorghum | nucleus | 26.69 | 21.26 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 14.29 | 21.23 |
| AT5G37900.1 | Thale cress | nucleus | 19.17 | 21.16 |
| CDY01695 | Canola | nucleus | 24.44 | 21.04 |
| Solyc03g034460.2.1 | Tomato | nucleus | 28.2 | 20.83 |
| Solyc03g042550.1.1 | Tomato | nucleus | 28.2 | 20.83 |
| AT5G62800.1 | Thale cress | nucleus | 27.07 | 20.69 |
| OQU84285 | Sorghum | cytosol | 24.06 | 20.58 |
| OQU78944 | Sorghum | nucleus | 24.81 | 20.25 |
| PGSC0003DMT400043050 | Potato | nucleus | 28.57 | 19.95 |
| KXG32028 | Sorghum | plastid | 25.19 | 19.94 |
| KXG32085 | Sorghum | nucleus | 16.92 | 19.91 |
| Bra004176.1-P | Field mustard | nucleus | 25.19 | 19.88 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 22.93 | 19.87 |
| EER92255 | Sorghum | nucleus | 22.56 | 19.87 |
| AT1G66650.1 | Thale cress | nucleus | 24.44 | 19.76 |
| CDY70665 | Canola | nucleus | 24.06 | 19.75 |
| CDX96138 | Canola | nucleus | 25.19 | 19.71 |
| AT1G66610.1 | Thale cress | nucleus | 27.07 | 19.67 |
| EER97677 | Sorghum | cytosol | 22.18 | 19.54 |
| AT5G37930.1 | Thale cress | nucleus | 25.56 | 19.48 |
| CDY36211 | Canola | nucleus | 26.32 | 19.39 |
| EES17735 | Sorghum | mitochondrion | 32.71 | 19.38 |
| Solyc03g042520.1.1 | Tomato | nucleus | 22.56 | 19.35 |
| Bra019710.1-P | Field mustard | nucleus | 24.81 | 19.3 |
| AT1G66660.2 | Thale cress | nucleus | 24.81 | 18.97 |
| EES06707 | Sorghum | nucleus | 24.44 | 18.9 |
| Solyc03g034450.2.1 | Tomato | nucleus | 27.44 | 18.62 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 18.42 | 18.42 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 22.18 | 18.1 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 22.93 | 17.28 |
| EES02573 | Sorghum | cytosol | 22.18 | 16.91 |
| KXG32019 | Sorghum | nucleus, plastid | 22.18 | 15.86 |
| EES02574 | Sorghum | nucleus | 23.31 | 13.84 |
| KXG19745 | Sorghum | extracellular | 4.89 | 13.54 |
| CDY01757 | Canola | cytosol | 2.26 | 11.32 |
| KXG22272 | Sorghum | cytosol | 4.14 | 10.78 |
| KXG30435 | Sorghum | cytosol | 4.14 | 10.78 |
| CDY01758 | Canola | cytosol | 16.92 | 10.3 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A1B6Q250 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | EnsemblPlants:KXG32008 | ProteinID:KXG32008 | ProteinID:KXG32008.1 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3003G089900 | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI00081ABD87 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr3:-:7845751..7849258
Molecular Weight (calculated)
29224.3 Da
IEP (calculated)
7.193
GRAVY (calculated)
0.008
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPQEPEEGE CTGAAKRRKA AAATDVSMEL DILDCPVCYH PLRPPIFQCA VGHVVCSSCC AKLPDKCHCC SITTGYNRCH IIEHVVDSTK VPCMYSNLGC
101: TEKITYYEKE DHAKVCPHAP CFCPEASCSF YGSTVELVEH FSAKHKWHSA KLSYNKAFRF RIAQGSTVLM GEDGHMFLVN MVVEAAGGVI SVFSIQPHIS
201: ESNFMCKLAV SCPEKSYAQC TQFQTRSSNL FDGLPKDCFT FVVPKLLLRG TSTNVTAMVS VTLIPP
101: TEKITYYEKE DHAKVCPHAP CFCPEASCSF YGSTVELVEH FSAKHKWHSA KLSYNKAFRF RIAQGSTVLM GEDGHMFLVN MVVEAAGGVI SVFSIQPHIS
201: ESNFMCKLAV SCPEKSYAQC TQFQTRSSNL FDGLPKDCFT FVVPKLLLRG TSTNVTAMVS VTLIPP
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.