CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32011	Sorghum	cytosol	49.46	75.72
KXG32010	Sorghum	extracellular	47.58	72.24
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	50.0	57.06
EES02573	Sorghum	cytosol	50.27	53.58
OQU86439	Sorghum	cytosol, mitochondrion, plastid	28.76	40.23
KXG32085	Sorghum	nucleus	18.55	30.53
OQU86460	Sorghum	nucleus	20.7	23.05
KXG32008	Sorghum	cytosol, nucleus, plastid	15.86	22.18
KXG32028	Sorghum	plastid	19.89	22.02
EER97677	Sorghum	cytosol	17.74	21.85
KXG37942	Sorghum	cytosol, nucleus, plastid	15.32	21.43
EER92255	Sorghum	nucleus	17.2	21.19
KXG37941	Sorghum	cytosol	15.86	21.07
KXG32009	Sorghum	nucleus	16.67	20.95
OQU84285	Sorghum	cytosol	17.47	20.9
OQU78944	Sorghum	nucleus	18.01	20.55
EES02178	Sorghum	cytosol, nucleus, peroxisome	16.4	19.87
OQU77422	Sorghum	cytosol	14.78	19.23
KXG32014	Sorghum	nucleus	11.02	18.64
EES06707	Sorghum	nucleus	17.2	18.6
EES00387	Sorghum	nucleus	15.86	18.5
OQU86453	Sorghum	cytosol	10.48	18.22
EES19270	Sorghum	cytosol, nucleus, peroxisome	17.2	18.13
EES17728	Sorghum	cytosol, mitochondrion, nucleus	15.86	18.04
EES17731	Sorghum	nucleus	15.86	17.05
OQU77414	Sorghum	mitochondrion, nucleus	15.86	16.67
KXG21322	Sorghum	nucleus	15.59	15.51
OQU77425	Sorghum	nucleus	15.32	15.16
EES17735	Sorghum	mitochondrion	16.94	14.03
KXG30435	Sorghum	cytosol	3.49	12.75
KXG22272	Sorghum	cytosol	3.49	12.75
EES02574	Sorghum	nucleus	14.52	12.05
KXG19745	Sorghum	extracellular	2.96	11.46

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1B6Q269	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlants:KXG32019	ProteinID:KXG32019
ProteinID:KXG32019.1	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF30
InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G091300	SUPFAM:SSF49599	SUPFAM:SSF57850	TMHMM:TMhelix	InterPro:TRAF-like
UniParc:UPI00081AE1FD	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:7940344..7945881

Molecular Weight (calculated)

41024.0 Da

IEP (calculated)

8.063

GRAVY (calculated)

0.123

Length

372 amino acids

Sequence
(BLAST)

001: MPEAAAVALA AKIFNIMQPN AETFAIPLHP VRELVLGWTG TGQSELQQLP QGDSATRRRL GALFYYLQPP SHRHRGPKLE TARRSSEKAM DLDAFECPIC
101: FSLFEGSIFQ CKNGHVVCDP CRVRIHGTCP SCRNPVGEIR CRALEKAIAD MVLPCAFSRH GCTQLLKHKE RQDHEALCHY APFVCPFQGC AYSVESTLLL
201: HDHILDTHAI NNVVSLVGST QVVLHWSTPF EVLLDPVDRC VFLLLNGGDV PSGRSLSVVC LGPRPMANQL LEYKLKVGGA GEPGALSLSA SGSVPCMRRW
301: AGQHPNDGFL FVPNAYWTSF SCVLVNVRVQ KSAVDSLVRC FKHASLETFN LLVLVFVCLA MALVLAWKTI YR

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.