Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37941 | Sorghum | cytosol | 63.53 | 60.36 |
| Os01t0124900-00 | Rice | cytosol | 37.22 | 50.0 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 35.71 | 35.71 |
| KXG32009 | Sorghum | nucleus | 37.22 | 33.45 |
| EES00387 | Sorghum | nucleus | 37.97 | 31.66 |
| CDY11709 | Canola | nucleus | 18.05 | 29.09 |
| OQU77422 | Sorghum | cytosol | 27.82 | 25.87 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.05 | 25.34 |
| AT5G37870.1 | Thale cress | nucleus | 26.32 | 24.91 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 30.08 | 24.46 |
| CDY36209 | Canola | plastid | 19.17 | 24.17 |
| CDY52473 | Canola | nucleus | 25.56 | 23.94 |
| KXG32011 | Sorghum | cytosol | 21.8 | 23.87 |
| CDY01699 | Canola | nucleus, plastid | 25.19 | 23.76 |
| Bra000425.1-P | Field mustard | nucleus | 25.19 | 23.67 |
| Bra025434.1-P | Field mustard | nucleus | 25.19 | 23.59 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 31.2 | 23.45 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 23.68 | 23.42 |
| AT5G37910.1 | Thale cress | nucleus | 24.06 | 23.19 |
| CDX99687 | Canola | nucleus | 24.44 | 22.97 |
| Bra018266.1-P | Field mustard | plastid | 24.81 | 22.84 |
| CDY10787 | Canola | plastid | 24.81 | 22.84 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.79 | 22.83 |
| CDY12498 | Canola | nucleus | 23.31 | 22.79 |
| KXG21322 | Sorghum | nucleus | 31.95 | 22.73 |
| AT1G66620.1 | Thale cress | nucleus | 26.69 | 22.68 |
| KXG32010 | Sorghum | extracellular | 20.68 | 22.45 |
| Bra012354.1-P | Field mustard | cytosol | 22.93 | 22.43 |
| CDY25763 | Canola | nucleus | 22.93 | 22.43 |
| AT5G37890.1 | Thale cress | nucleus | 24.06 | 22.38 |
| EES17731 | Sorghum | nucleus | 28.95 | 22.25 |
| AT1G66630.1 | Thale cress | cytosol | 24.81 | 21.78 |
| KRH42263 | Soybean | nucleus | 25.94 | 21.56 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 23.68 | 21.43 |
| KXG32014 | Sorghum | nucleus | 17.67 | 21.36 |
| CDY01695 | Canola | nucleus | 24.81 | 21.36 |
| KRH58384 | Soybean | nucleus | 25.56 | 21.25 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 23.68 | 21.21 |
| Bra022858.1-P | Field mustard | nucleus | 24.06 | 21.05 |
| CDY47873 | Canola | nucleus | 25.19 | 20.68 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 13.91 | 20.67 |
| CDY27008 | Canola | nucleus | 25.56 | 20.67 |
| Bra004402.1-P | Field mustard | nucleus | 24.44 | 20.5 |
| Bra028395.1-P | Field mustard | nucleus | 24.81 | 20.37 |
| OQU86453 | Sorghum | cytosol | 16.17 | 20.09 |
| AT5G37900.1 | Thale cress | nucleus | 18.05 | 19.92 |
| OQU77425 | Sorghum | nucleus | 27.82 | 19.68 |
| OQU78944 | Sorghum | nucleus | 24.06 | 19.63 |
| OQU84285 | Sorghum | cytosol | 22.93 | 19.61 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 14.66 | 19.5 |
| Solyc03g034460.2.1 | Tomato | nucleus | 26.32 | 19.44 |
| Bra004174.1-P | Field mustard | nucleus | 25.56 | 19.26 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 22.18 | 19.22 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 25.19 | 19.2 |
| EER92255 | Sorghum | nucleus | 21.43 | 18.87 |
| EER97677 | Sorghum | cytosol | 21.43 | 18.87 |
| AT1G66610.1 | Thale cress | nucleus | 25.94 | 18.85 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.81 | 18.33 |
| AT5G62800.1 | Thale cress | nucleus | 23.68 | 18.1 |
| AT5G37930.1 | Thale cress | nucleus | 23.68 | 18.05 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 18.05 | 18.05 |
| OQU86460 | Sorghum | nucleus | 22.56 | 17.96 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 21.8 | 17.79 |
| PGSC0003DMT400043050 | Potato | nucleus | 25.19 | 17.59 |
| Bra004176.1-P | Field mustard | nucleus | 22.18 | 17.51 |
| EES17735 | Sorghum | mitochondrion | 29.32 | 17.37 |
| CDX96138 | Canola | nucleus | 22.18 | 17.35 |
| KXG32085 | Sorghum | nucleus | 14.66 | 17.26 |
| AT1G66650.1 | Thale cress | nucleus | 21.05 | 17.02 |
| CDY70665 | Canola | nucleus | 20.68 | 16.98 |
| EES02573 | Sorghum | cytosol | 22.18 | 16.91 |
| EES06707 | Sorghum | nucleus | 21.8 | 16.86 |
| Bra019710.1-P | Field mustard | nucleus | 21.43 | 16.67 |
| Solyc03g034450.2.1 | Tomato | nucleus | 24.44 | 16.58 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 21.43 | 16.15 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.8 | 16.13 |
| AT1G66660.2 | Thale cress | nucleus | 21.05 | 16.09 |
| KXG32028 | Sorghum | plastid | 20.3 | 16.07 |
| CDY36211 | Canola | nucleus | 21.43 | 15.79 |
| KXG32019 | Sorghum | nucleus, plastid | 21.43 | 15.32 |
| CDY01757 | Canola | cytosol | 2.63 | 13.21 |
| EES02574 | Sorghum | nucleus | 19.55 | 11.61 |
| CDY01758 | Canola | cytosol | 16.54 | 10.07 |
| KXG30435 | Sorghum | cytosol | 3.38 | 8.82 |
| KXG22272 | Sorghum | cytosol | 3.38 | 8.82 |
| KXG19745 | Sorghum | extracellular | 3.01 | 8.33 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A1B6QJ44 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | EnsemblPlants:KXG37942 | ProteinID:KXG37942 | ProteinID:KXG37942.1 | PFAM:PF03145 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3001G154800 |
| SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI00081ADCE1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:12426769..12428435
Molecular Weight (calculated)
29441.2 Da
IEP (calculated)
6.289
GRAVY (calculated)
-0.348
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MELKGETKLE GVRMAMGAFD CPICYEPLMP PIYQCGVGHL ICNSCCIRLN KCPLCPKSAF ERCFGMERVV ESIEVPCCFA ENGCTKKMAY FNKKKHEKAC
101: KHGPCFCPEP GCGFSGPAAK LPDHFTDCHK WPNTAFKYYV QFGLRLQPGP HVLRAQDGTV FLMNVVAAEP LGHAISLVCV QPEATNSPFG CSKVFSCFTD
201: HCQISTVATV RCSSLADGPP KDAFCVVPKA SGGRTMSRMS WRKDDEDESY DEDEEEDNDS DNNKKE
101: KHGPCFCPEP GCGFSGPAAK LPDHFTDCHK WPNTAFKYYV QFGLRLQPGP HVLRAQDGTV FLMNVVAAEP LGHAISLVCV QPEATNSPFG CSKVFSCFTD
201: HCQISTVATV RCSSLADGPP KDAFCVVPKA SGGRTMSRMS WRKDDEDESY DEDEEEDNDS DNNKKE
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.