Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21322 | Sorghum | nucleus | 70.34 | 66.58 |
| OQU77425 | Sorghum | nucleus | 60.45 | 56.91 |
| OQU77422 | Sorghum | cytosol | 35.03 | 43.36 |
| EES17731 | Sorghum | nucleus | 42.09 | 43.06 |
| Os05t0152900-00 | Rice | nucleus | 48.02 | 42.5 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 38.7 | 41.9 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 26.84 | 35.71 |
| Os05t0152600-00 | Rice | mitochondrion | 48.87 | 33.66 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 23.45 | 31.2 |
| EES17735 | Sorghum | mitochondrion | 38.7 | 30.51 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 31.36 | 29.06 |
| KXG32009 | Sorghum | nucleus | 24.29 | 29.05 |
| KXG37941 | Sorghum | cytosol | 22.32 | 28.21 |
| CDY11709 | Canola | nucleus | 12.99 | 27.88 |
| CDY36209 | Canola | plastid | 16.38 | 27.49 |
| KXG32011 | Sorghum | cytosol | 17.8 | 25.93 |
| EES00387 | Sorghum | nucleus | 23.16 | 25.71 |
| CDY12498 | Canola | nucleus | 19.49 | 25.37 |
| Bra012354.1-P | Field mustard | cytosol | 18.93 | 24.63 |
| CDY25763 | Canola | nucleus | 18.93 | 24.63 |
| KXG32014 | Sorghum | nucleus | 15.25 | 24.55 |
| KRH58384 | Soybean | nucleus | 22.03 | 24.38 |
| KXG32010 | Sorghum | extracellular | 16.67 | 24.08 |
| KRH42263 | Soybean | nucleus | 21.75 | 24.06 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 17.51 | 23.05 |
| Bra025434.1-P | Field mustard | nucleus | 18.36 | 22.89 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 14.12 | 22.62 |
| CDX99687 | Canola | nucleus | 18.08 | 22.61 |
| AT5G37870.1 | Thale cress | nucleus | 17.8 | 22.42 |
| CDY52473 | Canola | nucleus | 17.8 | 22.18 |
| CDY10787 | Canola | plastid | 18.08 | 22.15 |
| Bra018266.1-P | Field mustard | plastid | 18.08 | 22.15 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.3 | 21.74 |
| Bra022858.1-P | Field mustard | nucleus | 18.64 | 21.71 |
| CDY01699 | Canola | nucleus, plastid | 16.95 | 21.28 |
| Bra000425.1-P | Field mustard | nucleus | 16.95 | 21.2 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.51 | 21.09 |
| AT1G66620.1 | Thale cress | nucleus | 18.36 | 20.77 |
| AT5G37910.1 | Thale cress | nucleus | 16.1 | 20.65 |
| OQU86453 | Sorghum | cytosol | 12.43 | 20.56 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 17.23 | 20.54 |
| AT1G66630.1 | Thale cress | cytosol | 17.51 | 20.46 |
| CDY47873 | Canola | nucleus | 18.64 | 20.37 |
| AT5G37900.1 | Thale cress | nucleus | 13.84 | 20.33 |
| AT5G37890.1 | Thale cress | nucleus | 16.38 | 20.28 |
| Bra028395.1-P | Field mustard | nucleus | 18.36 | 20.06 |
| AT5G37930.1 | Thale cress | nucleus | 19.77 | 20.06 |
| OQU86460 | Sorghum | nucleus | 18.64 | 19.76 |
| AT1G66650.1 | Thale cress | nucleus | 18.36 | 19.76 |
| CDY27008 | Canola | nucleus | 18.36 | 19.76 |
| CDY01695 | Canola | nucleus | 17.23 | 19.74 |
| OQU78944 | Sorghum | nucleus | 18.08 | 19.63 |
| Bra004402.1-P | Field mustard | nucleus | 17.51 | 19.56 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.89 | 19.55 |
| AT1G66660.2 | Thale cress | nucleus | 18.93 | 19.25 |
| EES02573 | Sorghum | cytosol | 18.93 | 19.2 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 17.51 | 19.02 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 10.73 | 19.0 |
| EER92255 | Sorghum | nucleus | 16.1 | 18.87 |
| CDY70665 | Canola | nucleus | 17.23 | 18.83 |
| Bra004174.1-P | Field mustard | nucleus | 18.64 | 18.7 |
| PGSC0003DMT400043050 | Potato | nucleus | 20.06 | 18.64 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 18.36 | 18.62 |
| Solyc03g034460.2.1 | Tomato | nucleus | 18.93 | 18.61 |
| EER97677 | Sorghum | cytosol | 15.82 | 18.54 |
| KXG32028 | Sorghum | plastid | 17.51 | 18.45 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 15.82 | 18.24 |
| CDX96138 | Canola | nucleus | 17.51 | 18.24 |
| AT5G62800.1 | Thale cress | nucleus | 17.8 | 18.1 |
| Bra004176.1-P | Field mustard | nucleus | 17.23 | 18.1 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.36 | 18.06 |
| OQU84285 | Sorghum | cytosol | 15.82 | 18.01 |
| Bra019710.1-P | Field mustard | nucleus | 16.95 | 17.54 |
| KXG32085 | Sorghum | nucleus | 11.02 | 17.26 |
| AT1G66610.1 | Thale cress | nucleus | 17.8 | 17.21 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 12.71 | 16.92 |
| CDY36211 | Canola | nucleus | 17.23 | 16.9 |
| Solyc03g034450.2.1 | Tomato | nucleus | 18.64 | 16.84 |
| Solyc03g042520.1.1 | Tomato | nucleus | 14.69 | 16.77 |
| EES06707 | Sorghum | nucleus | 16.1 | 16.57 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 15.82 | 15.86 |
| KXG32019 | Sorghum | nucleus, plastid | 16.67 | 15.86 |
| EES02574 | Sorghum | nucleus | 19.49 | 15.4 |
| CDY01757 | Canola | cytosol | 1.69 | 11.32 |
| KXG30435 | Sorghum | cytosol | 3.11 | 10.78 |
| KXG22272 | Sorghum | cytosol | 3.11 | 10.78 |
| CDY01758 | Canola | cytosol | 12.15 | 9.84 |
| KXG19745 | Sorghum | extracellular | 2.54 | 9.38 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:8075983 | UniProt:A0A1Z5R0V6 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | EnsemblPlants:OQU77414 |
| ProteinID:OQU77414 | ProteinID:OQU77414.1 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF35 |
| InterPro:SINA-like | EnsemblPlantsGene:SORBI_3009G045700 | SUPFAM:SSF49599 | unigene:Sbi.9251 | InterPro:TRAF-like | UniParc:UPI000B42610B |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:4372915..4374145
Molecular Weight (calculated)
38766.9 Da
IEP (calculated)
6.825
GRAVY (calculated)
-0.241
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRRPRPVMS EQPSSTSFTL VKRRKKMVST FSFEEDEDSD SVEEDEDLGA ADSLHAPPDV RARTSTAVAN VTVGDADALE CGVCFLALRP PIFQCEVGHV
101: VCSACRDKLE ATGNGNCHVC RAATRGGYRR CYAMERLVDC IRVPCPYAAH GCDATPPYHG QESHRQVCPH APCHCPGDSC GFIGSETALM DHFAGAHKWP
201: CTTKVRAGEA FSIRLRDGFN FFLLADHDRC GDGEQAAVTC CSVPCRLFLL NVMKERLSRA ISVICIHPHT SSAAAANNGD QQLPLTQCEL VFSCYGDRSS
301: CRSHYQSSVF RVVCTDLSSG LPNPENCFQF FVPNTVFGVG DDKNSIQIKA RIIN
101: VCSACRDKLE ATGNGNCHVC RAATRGGYRR CYAMERLVDC IRVPCPYAAH GCDATPPYHG QESHRQVCPH APCHCPGDSC GFIGSETALM DHFAGAHKWP
201: CTTKVRAGEA FSIRLRDGFN FFLLADHDRC GDGEQAAVTC CSVPCRLFLL NVMKERLSRA ISVICIHPHT SSAAAANNGD QQLPLTQCEL VFSCYGDRSS
301: CRSHYQSSVF RVVCTDLSSG LPNPENCFQF FVPNTVFGVG DDKNSIQIKA RIIN
001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.