Factsheet for Os05t0152900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0152600-00	Rice	mitochondrion	63.0	49.03
OQU77414	Sorghum	mitochondrion, nucleus	42.5	48.02
TraesCS2A01G446400.1	Wheat	cytosol, nucleus, plastid	29.75	44.24
KXG21322	Sorghum	nucleus	40.75	43.58
OQU77425	Sorghum	nucleus	39.5	42.02
TraesCS1D01G102900.1	Wheat	nucleus	29.5	30.89
Os01t0125500-00	Rice	mitochondrion	20.25	28.83
Os01t0125000-00	Rice	nucleus	24.25	28.61
Os01t0124900-00	Rice	cytosol	12.25	24.75
Os06t0311300-01	Rice	plasma membrane	14.25	22.8
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	16.5	21.85
Os01t0761900-00	Rice	cytosol	8.5	20.86
Os03t0356414-01	Rice	cytosol	14.75	19.6
Os07t0659800-01	Rice	cytosol	14.5	19.21
Os01t0123800-00	Rice	nucleus	18.5	19.17
Os02t0128800-01	Rice	cytosol	14.5	18.83
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	15.5	17.17
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	14.5	16.62
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	14.25	16.43
Os05t0152700-00	Rice	cytosol, extracellular	3.5	14.14

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A0P0WI27	ProteinID:BAS92328.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os05g0152900
EnsemblPlants:Os05t0152900-00	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF35	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000393AADB	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg

Description

Seven-in-absentia protein, sina domain containing protein. (Os05t0152900-00)

Coordinates

chr5:+:3045853..3047055

Molecular Weight (calculated)

43180.1 Da

IEP (calculated)

5.210

GRAVY (calculated)

-0.516

Length

400 amino acids

Sequence
(BLAST)

001: MARSIASSSR RRVMAALDHE GDTMARKKRR VYVAIEEIES HGHEEDDDGG EEVEEEDEQS HGEADGDGDD AAAAMEESDG HDEEGDNGGD EPDQSPDGDD
101: MEEEEERGGG VHGGEAEVET FHHSEQASSA RPVVAVAGVT VEDADALECG VCCLPLRPPI FQCEVGHVVC APCRDKLAPA GRCHVCRAAV AGGEYRRCHA
201: LERLVDAIRV ACPHAAHGCG ATPAYHALDA HRRACPHAPC RCPGESCGFA GSTAALLDHF AAAHAWPCVA DVRAGETHRL HDGFNFHRVE HRGGGDHRLI
301: MLNMTREPLG RAISVLCIHP HAAPAAEMQC ELRLHVSRPA DDAGGGLCIS HYQKSVFHIG YSDLADGVPD RRRRFQFVVP RHVVGGDNED GVQIRVRIKY

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.