Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G070000.1 | Wheat | plastid | 39.01 | 61.32 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 19.11 | 34.11 |
| OQU77422 | Sorghum | cytosol | 25.39 | 33.92 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 29.06 | 31.36 |
| EES17731 | Sorghum | nucleus | 27.75 | 30.64 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 22.51 | 30.5 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 25.92 | 30.28 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 21.47 | 29.93 |
| Os05t0152900-00 | Rice | nucleus | 30.89 | 29.5 |
| KXG21322 | Sorghum | nucleus | 28.01 | 28.61 |
| OQU77425 | Sorghum | nucleus | 26.96 | 27.39 |
| CDY11709 | Canola | nucleus | 11.26 | 26.06 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 18.32 | 25.55 |
| CDY36209 | Canola | plastid | 13.87 | 25.12 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 19.37 | 24.92 |
| Bra022858.1-P | Field mustard | nucleus | 19.63 | 24.67 |
| EES17735 | Sorghum | mitochondrion | 28.8 | 24.5 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 20.94 | 23.88 |
| CDX99687 | Canola | nucleus | 17.54 | 23.67 |
| CDY52473 | Canola | nucleus | 17.54 | 23.59 |
| Bra025434.1-P | Field mustard | nucleus | 17.54 | 23.59 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 16.49 | 23.42 |
| Bra018266.1-P | Field mustard | plastid | 17.54 | 23.18 |
| CDY10787 | Canola | plastid | 17.54 | 23.18 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 13.35 | 23.08 |
| PGSC0003DMT400043047 | Potato | cytosol | 10.99 | 22.83 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.54 | 22.79 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 17.54 | 22.56 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 11.78 | 22.5 |
| CDY12498 | Canola | nucleus | 15.97 | 22.43 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 17.54 | 22.41 |
| Os05t0152600-00 | Rice | mitochondrion | 30.1 | 22.37 |
| Bra012354.1-P | Field mustard | cytosol | 15.71 | 22.06 |
| CDY25763 | Canola | nucleus | 15.71 | 22.06 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 20.16 | 21.88 |
| AT1G66620.1 | Thale cress | nucleus | 17.8 | 21.73 |
| AT5G37870.1 | Thale cress | nucleus | 15.71 | 21.35 |
| Bra000425.1-P | Field mustard | nucleus | 15.71 | 21.2 |
| Bra004402.1-P | Field mustard | nucleus | 17.54 | 21.14 |
| AT5G37890.1 | Thale cress | nucleus | 15.71 | 20.98 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.69 | 20.67 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 18.32 | 20.59 |
| CDY47873 | Canola | nucleus | 17.28 | 20.37 |
| KRH58384 | Soybean | nucleus | 17.02 | 20.31 |
| AT5G37910.1 | Thale cress | nucleus | 14.66 | 20.29 |
| CDY01699 | Canola | nucleus, plastid | 14.92 | 20.21 |
| Bra028395.1-P | Field mustard | nucleus | 17.02 | 20.06 |
| CDY27008 | Canola | nucleus | 17.28 | 20.06 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 14.4 | 19.93 |
| AT1G66630.1 | Thale cress | cytosol | 15.71 | 19.8 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 17.28 | 19.64 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 17.8 | 19.48 |
| KRH42263 | Soybean | nucleus | 16.23 | 19.38 |
| Bra004174.1-P | Field mustard | nucleus | 17.8 | 19.26 |
| AT1G66610.1 | Thale cress | nucleus | 18.32 | 19.13 |
| AT5G37900.1 | Thale cress | nucleus | 12.04 | 19.09 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 13.35 | 19.03 |
| Solyc03g034460.2.1 | Tomato | nucleus | 17.8 | 18.89 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 13.87 | 18.6 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 9.69 | 18.41 |
| Solyc03g042550.1.1 | Tomato | nucleus | 17.28 | 18.33 |
| PGSC0003DMT400043050 | Potato | nucleus | 18.06 | 18.11 |
| CDY01695 | Canola | nucleus | 14.4 | 17.8 |
| AT5G37930.1 | Thale cress | nucleus | 16.23 | 17.77 |
| CDY70665 | Canola | nucleus | 14.92 | 17.59 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 13.61 | 17.28 |
| AT5G62800.1 | Thale cress | nucleus | 15.71 | 17.24 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 20.68 | 17.21 |
| Solyc03g034450.2.1 | Tomato | nucleus | 17.54 | 17.09 |
| AT1G66650.1 | Thale cress | nucleus | 14.66 | 17.02 |
| CDY01757 | Canola | cytosol | 2.36 | 16.98 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 13.35 | 16.94 |
| Bra019710.1-P | Field mustard | nucleus | 14.92 | 16.67 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 14.14 | 16.62 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 13.87 | 16.41 |
| AT1G66660.2 | Thale cress | nucleus | 14.66 | 16.09 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 15.18 | 15.89 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 10.47 | 15.87 |
| Solyc03g042520.1.1 | Tomato | nucleus | 12.83 | 15.81 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 13.87 | 15.54 |
| CDX96138 | Canola | nucleus | 13.61 | 15.29 |
| Bra004176.1-P | Field mustard | nucleus | 13.35 | 15.13 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 13.87 | 14.13 |
| CDY36211 | Canola | nucleus | 13.35 | 14.13 |
| CDY01758 | Canola | cytosol | 12.04 | 10.53 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF35 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS1D01G102900 | EnsemblPlants:TraesCS1D01G102900.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1D:+:92234960..92236186
Molecular Weight (calculated)
40488.8 Da
IEP (calculated)
5.044
GRAVY (calculated)
-0.191
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWSIAANTG GSSQQTDGEG APRPSEDAAA AWGSGRARPT SDAWGTGTRS PVDDAVVETW GTRPSTDARF TDSWASLVTT EPRVTGGTWG PWSSAAQGAG
101: SWRSWPSEAA RENWSGWAPE RRPSTVPWPS EHAVITNVTV EDARALHCGV CGLPLKPPIF ECDLGQAVCS ACRGPGYRRC RAMENLVATV RVPCPNAAHG
201: CDATPAYYDM HAHGLACAHA PGTRCPADAC EFVGSMAALL DHFTAVHGWT LTTEDGVGKS FDVDLQDGFN VVTTAVRDGG NQLLLLLNVV SHPFGRTIAA
301: VCISPYPAAV ESWSSAAASK TVQLELRYSA ASHYQESEFN VPFADIADGF PDVSELAQFV VPKSVHSDDH ATTLVSAYIT IK
101: SWRSWPSEAA RENWSGWAPE RRPSTVPWPS EHAVITNVTV EDARALHCGV CGLPLKPPIF ECDLGQAVCS ACRGPGYRRC RAMENLVATV RVPCPNAAHG
201: CDATPAYYDM HAHGLACAHA PGTRCPADAC EFVGSMAALL DHFTAVHGWT LTTEDGVGKS FDVDLQDGFN VVTTAVRDGG NQLLLLLNVV SHPFGRTIAA
301: VCISPYPAAV ESWSSAAASK TVQLELRYSA ASHYQESEFN VPFADIADGF PDVSELAQFV VPKSVHSDDH ATTLVSAYIT IK
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.