Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70665 | Canola | nucleus | 58.05 | 58.95 |
| Bra019710.1-P | Field mustard | nucleus | 59.88 | 57.6 |
| AT1G66660.2 | Thale cress | nucleus | 45.59 | 43.1 |
| AT5G37930.1 | Thale cress | nucleus | 44.38 | 41.83 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 10.64 | 38.46 |
| AT5G37870.1 | Thale cress | nucleus | 32.22 | 37.72 |
| AT5G37890.1 | Thale cress | nucleus | 32.22 | 37.06 |
| AT5G37910.1 | Thale cress | nucleus | 30.09 | 35.87 |
| AT1G66620.1 | Thale cress | nucleus | 31.91 | 33.55 |
| AT5G37900.1 | Thale cress | nucleus | 24.01 | 32.78 |
| AT1G66630.1 | Thale cress | cytosol | 29.48 | 32.01 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.76 | 29.41 |
| KRH42263 | Soybean | nucleus | 28.27 | 29.06 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 18.84 | 28.97 |
| KRH58384 | Soybean | nucleus | 27.36 | 28.12 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 20.97 | 27.38 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 22.8 | 27.37 |
| AT1G66610.1 | Thale cress | nucleus | 30.4 | 27.32 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 22.49 | 27.01 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.41 | 27.0 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 22.19 | 26.64 |
| AT5G62800.1 | Thale cress | nucleus | 27.66 | 26.15 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 21.28 | 25.55 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.29 | 25.54 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 20.97 | 25.18 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 20.97 | 25.09 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 20.97 | 24.91 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 21.28 | 24.82 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 21.28 | 24.82 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 20.67 | 24.73 |
| Solyc03g034460.2.1 | Tomato | nucleus | 27.05 | 24.72 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 20.97 | 24.56 |
| KXG32014 | Sorghum | nucleus | 16.41 | 24.55 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 19.76 | 24.53 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.76 | 24.44 |
| PGSC0003DMT400043050 | Potato | nucleus | 27.96 | 24.15 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 20.67 | 24.11 |
| Solyc03g042550.1.1 | Tomato | nucleus | 26.14 | 23.89 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 19.45 | 23.79 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 20.36 | 23.76 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 20.06 | 23.74 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 21.58 | 23.67 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 21.88 | 23.45 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 21.28 | 23.41 |
| KXG32009 | Sorghum | nucleus | 20.97 | 23.31 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 19.45 | 23.27 |
| Zm00001d041049_P001 | Maize | nucleus | 23.1 | 23.24 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 20.36 | 22.95 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 20.97 | 22.92 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 19.76 | 22.89 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 20.36 | 22.87 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 21.88 | 22.86 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 21.28 | 22.8 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 18.54 | 22.76 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 20.67 | 22.67 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 20.06 | 22.6 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 20.36 | 22.56 |
| Solyc03g034450.2.1 | Tomato | nucleus | 26.75 | 22.45 |
| OQU78944 | Sorghum | nucleus | 22.19 | 22.39 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 20.06 | 22.22 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 20.06 | 22.22 |
| TraesCSU01G045900.1 | Wheat | cytosol | 20.06 | 22.07 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 19.45 | 22.07 |
| Solyc03g042520.1.1 | Tomato | nucleus | 20.67 | 21.94 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 19.45 | 21.92 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.41 | 21.86 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 21.88 | 21.75 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 22.19 | 21.73 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 21.58 | 21.39 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 21.28 | 21.34 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 17.02 | 21.05 |
| OQU86453 | Sorghum | cytosol | 13.68 | 21.03 |
| OQU77422 | Sorghum | cytosol | 18.24 | 20.98 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 17.02 | 20.82 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 17.63 | 20.71 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 20.97 | 20.6 |
| EES00387 | Sorghum | nucleus | 19.76 | 20.38 |
| AT2G41980.1 | Thale cress | nucleus | 18.84 | 20.33 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 21.58 | 20.17 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 15.5 | 20.16 |
| AT3G58040.3 | Thale cress | cytosol | 18.84 | 20.13 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 21.88 | 20.11 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 20.67 | 20.06 |
| KXG37941 | Sorghum | cytosol | 17.02 | 20.0 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.16 | 20.0 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.02 | 19.93 |
| AT3G61790.1 | Thale cress | nucleus | 19.45 | 19.63 |
| AT4G27880.1 | Thale cress | nucleus | 19.15 | 19.27 |
| AT5G53360.1 | Thale cress | plasma membrane | 13.37 | 18.88 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.97 | 18.5 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 20.97 | 18.4 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 20.97 | 18.4 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 19.76 | 18.36 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 18.24 | 18.35 |
| HORVU2Hr1G118840.1 | Barley | plastid | 20.67 | 18.33 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 18.54 | 17.94 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 18.54 | 17.94 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 18.54 | 17.94 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 18.54 | 17.89 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 15.2 | 17.86 |
| TraesCSU01G021700.1 | Wheat | nucleus | 19.15 | 17.26 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 18.84 | 16.99 |
| EES17731 | Sorghum | nucleus | 17.63 | 16.76 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 18.54 | 16.71 |
| KXG21322 | Sorghum | nucleus | 18.84 | 16.58 |
| OQU77425 | Sorghum | nucleus | 18.84 | 16.49 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 16.41 | 16.36 |
| EES17735 | Sorghum | mitochondrion | 21.58 | 15.81 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 21.58 | 15.57 |
| TraesCSU01G231400.1 | Wheat | nucleus | 16.11 | 15.32 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 21.28 | 15.25 |
| TraesCS1A01G070000.1 | Wheat | plastid | 11.25 | 15.23 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 20.97 | 14.87 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 17.02 | 14.66 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 17.33 | 14.07 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.16 | 14.04 |
| EES02574 | Sorghum | nucleus | 17.93 | 13.17 |
| AT3G13672.2 | Thale cress | nucleus | 8.81 | 11.93 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.91 | 3.03 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:842983 | ProteinID:AAG51169.1 | ProteinID:AAG60080.1 |
| ProteinID:AEE34540.1 | ArrayExpress:AT1G66650 | EnsemblPlantsGene:AT1G66650 | RefSeq:AT1G66650 | TAIR:AT1G66650 | RefSeq:AT1G66650-TAIR-G |
| EnsemblPlants:AT1G66650.1 | TAIR:AT1G66650.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_849853.1 | PFAM:PF03145 | PO:PO:0000037 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | UniProt:Q9C9M0 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI00000A2E6D | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : |
Description
E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
Coordinates
chr1:-:24859917..24861821
Molecular Weight (calculated)
36940.5 Da
IEP (calculated)
8.394
GRAVY (calculated)
-0.393
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.