Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G363200.1 | Wheat | nucleus | 94.26 | 95.12 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 93.66 | 92.26 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 91.24 | 84.36 |
| Os06t0311300-01 | Rice | plasma membrane | 49.55 | 65.6 |
| Zm00001d041049_P001 | Maize | nucleus | 64.65 | 65.44 |
| OQU78944 | Sorghum | nucleus | 62.84 | 63.8 |
| CDX99687 | Canola | nucleus | 25.98 | 30.39 |
| CDY36209 | Canola | plastid | 19.34 | 30.33 |
| Bra025434.1-P | Field mustard | nucleus | 25.98 | 30.28 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 16.01 | 29.94 |
| CDY52473 | Canola | nucleus | 25.68 | 29.93 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 24.47 | 29.56 |
| KRH58384 | Soybean | nucleus | 27.79 | 28.75 |
| KRH42263 | Soybean | nucleus | 27.79 | 28.75 |
| CDY01699 | Canola | nucleus, plastid | 24.47 | 28.72 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.22 | 28.5 |
| CDY11709 | Canola | nucleus | 13.9 | 27.88 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 22.05 | 27.14 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 22.05 | 26.64 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 22.05 | 26.55 |
| Bra022858.1-P | Field mustard | nucleus | 24.17 | 26.32 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.52 | 26.24 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 21.15 | 26.12 |
| TraesCS3A01G027500.1 | Wheat | plastid | 21.75 | 26.09 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.5 | 26.09 |
| AT1G66630.1 | Thale cress | cytosol | 23.87 | 26.07 |
| Bra028395.1-P | Field mustard | nucleus | 25.38 | 25.93 |
| CDY47873 | Canola | nucleus | 25.38 | 25.93 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 22.05 | 25.89 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 21.75 | 25.81 |
| CDY25763 | Canola | nucleus | 21.15 | 25.74 |
| Bra012354.1-P | Field mustard | cytosol | 20.85 | 25.37 |
| CDY12498 | Canola | nucleus | 20.85 | 25.37 |
| AT5G37910.1 | Thale cress | nucleus | 21.15 | 25.36 |
| AT5G37870.1 | Thale cress | nucleus | 21.45 | 25.27 |
| Bra018266.1-P | Field mustard | plastid | 22.05 | 25.26 |
| CDY10787 | Canola | plastid | 22.05 | 25.26 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 22.66 | 25.25 |
| CDY27008 | Canola | nucleus | 25.08 | 25.23 |
| AT1G66620.1 | Thale cress | nucleus | 23.57 | 24.92 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 20.24 | 24.91 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 22.05 | 24.83 |
| AT5G37890.1 | Thale cress | nucleus | 21.45 | 24.83 |
| Bra000425.1-P | Field mustard | nucleus | 21.15 | 24.73 |
| AT5G37930.1 | Thale cress | nucleus | 25.98 | 24.64 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 20.24 | 24.63 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 20.24 | 24.36 |
| Solyc03g034460.2.1 | Tomato | nucleus | 26.28 | 24.17 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 15.11 | 23.92 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.34 | 23.79 |
| PGSC0003DMT400043050 | Potato | nucleus | 27.19 | 23.62 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 18.13 | 23.17 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 21.45 | 23.13 |
| Solyc03g042550.1.1 | Tomato | nucleus | 25.08 | 23.06 |
| Bra004402.1-P | Field mustard | nucleus | 21.75 | 22.71 |
| Solyc03g034450.2.1 | Tomato | nucleus | 26.89 | 22.7 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 20.24 | 22.56 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 21.45 | 22.54 |
| AT5G37900.1 | Thale cress | nucleus | 16.31 | 22.41 |
| AT1G66610.1 | Thale cress | nucleus | 24.77 | 22.4 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 23.57 | 22.35 |
| Bra004174.1-P | Field mustard | nucleus | 23.57 | 22.1 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 18.73 | 22.06 |
| AT1G66650.1 | Thale cress | nucleus | 21.75 | 21.88 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 19.03 | 21.72 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 19.94 | 21.22 |
| CDY01695 | Canola | nucleus | 19.64 | 21.04 |
| Solyc03g042520.1.1 | Tomato | nucleus | 19.64 | 20.97 |
| Bra004176.1-P | Field mustard | nucleus | 21.15 | 20.77 |
| CDY70665 | Canola | nucleus | 20.24 | 20.68 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.18 | 20.67 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 20.85 | 20.29 |
| CDX96138 | Canola | nucleus | 20.85 | 20.29 |
| Bra019710.1-P | Field mustard | nucleus | 20.85 | 20.18 |
| TraesCS1A01G070000.1 | Wheat | plastid | 14.5 | 19.75 |
| CDY36211 | Canola | nucleus | 21.45 | 19.67 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 17.82 | 19.6 |
| AT5G62800.1 | Thale cress | nucleus | 20.54 | 19.54 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 10.88 | 19.35 |
| AT1G66660.2 | Thale cress | nucleus | 19.34 | 18.39 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 18.73 | 18.18 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 16.92 | 17.95 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 16.92 | 17.55 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 19.64 | 17.43 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 10.27 | 17.0 |
| CDY01757 | Canola | cytosol | 2.72 | 16.98 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 17.52 | 16.71 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 22.96 | 16.67 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 18.13 | 16.44 |
| CDY01758 | Canola | cytosol | 15.71 | 11.9 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF32 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS5A01G531400 | EnsemblPlants:TraesCS5A01G531400.2 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | TIGR:cd16571 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5A:-:689618028..689620223
Molecular Weight (calculated)
35703.2 Da
IEP (calculated)
5.550
GRAVY (calculated)
-0.117
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFSFADAD ADEDPPPATA AAAGSDKRKR DGSPAPDDGA AGGGPPPEAR RLEVAGGERE ERAVAGCGRE VGRVGAGGDG DAVGISMRID PDLLDCSICF
101: EPLCPPLYQC QNGHVACLSC WSRLSNKCHV CSHDAIFARN IALEKIVESI KSSCAYAKWG CCELVSYTQR NSHEESCLFA PLMCPIPGCG YRGFTGCWSG
201: HFLVDHHSAD FLHFAYGQSF EVNLEASLPF LVLLGEDDHL FLLLNKNMTP FGHAFSVVCL RTGDLNWKFS YEIEAASTRN PENCLQLKAS VTNAKEWAGL
301: HPTKAFLLVP YDFCSSTNLK LNVSVGRSVS V
101: EPLCPPLYQC QNGHVACLSC WSRLSNKCHV CSHDAIFARN IALEKIVESI KSSCAYAKWG CCELVSYTQR NSHEESCLFA PLMCPIPGCG YRGFTGCWSG
201: HFLVDHHSAD FLHFAYGQSF EVNLEASLPF LVLLGEDDHL FLLLNKNMTP FGHAFSVVCL RTGDLNWKFS YEIEAASTRN PENCLQLKAS VTNAKEWAGL
301: HPTKAFLLVP YDFCSSTNLK LNVSVGRSVS V
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.