Factsheet for TraesCS3A01G101600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G101400.1	Wheat	cytosol	64.41	54.55
HORVU3Hr1G018420.2	Barley	plastid	75.14	41.96
TraesCS4A01G395500.1	Wheat	cytosol	50.28	31.9
TraesCS4A01G369000.1	Wheat	cytosol	33.33	31.72
TraesCS4A01G395600.1	Wheat	cytosol	44.63	30.5
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	36.72	29.02
OQU86439	Sorghum	cytosol, mitochondrion, plastid	42.94	28.57
TraesCS3A01G027900.1	Wheat	cytosol	33.9	22.06
TraesCS3A01G027500.1	Wheat	plastid	32.2	20.65
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	31.07	20.07
TraesCS3A01G030100.1	Wheat	nucleus	27.12	16.16
TraesCS5A01G531400.2	Wheat	nucleus	29.94	16.01
TraesCS3A01G048300.1	Wheat	nucleus	23.73	15.33
TraesCS1A01G060800.1	Wheat	nucleus	26.55	15.31
TraesCS3A01G031300.1	Wheat	cytosol	24.29	15.3
TraesCS5A01G228300.1	Wheat	cytosol	27.12	15.24
TraesCS3A01G030800.1	Wheat	cytosol	23.16	14.91
TraesCS3A01G031100.1	Wheat	cytosol	22.6	14.87
TraesCS3A01G062800.1	Wheat	nucleus	23.73	14.48
TraesCS3A01G030600.1	Wheat	nucleus	22.6	14.18
TraesCS6A01G086800.1	Wheat	nucleus	24.86	14.15
TraesCS2A01G446400.1	Wheat	cytosol, nucleus, plastid	21.47	14.13
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	24.86	14.1
TraesCS3A01G062700.1	Wheat	nucleus	21.47	13.82
TraesCS4A01G148400.2	Wheat	nucleus	23.16	13.62
TraesCS1A01G371400.1	Wheat	cytosol	15.25	13.5
TraesCS3A01G031200.1	Wheat	cytosol	20.34	13.43
TraesCS2A01G129000.1	Wheat	plasma membrane	23.73	13.17
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	24.86	12.68
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	24.29	12.61
TraesCS3A01G032200.1	Wheat	nucleus	23.16	12.06
TraesCS1A01G070000.1	Wheat	plastid	14.69	10.7
TraesCS3A01G032100.1	Wheat	nucleus	26.55	10.31
TraesCS2A01G589200.1	Wheat	nucleus, plastid	19.21	9.12
TraesCS2A01G586400.1	Wheat	nucleus	18.08	8.77

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF30	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G101600	EnsemblPlants:TraesCS3A01G101600.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:+:65995530..65996144

Molecular Weight (calculated)

19777.8 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.321

Length

177 amino acids

Sequence
(BLAST)

001: MDTLECDICY LPFESQVFSC KNGHAACANC CISMHRKCPS CNEPIGDFRC RATEKILAGM TRPCRFKKHG CTETVRYTEA RAHEEEACSF APCRCPFDGC
101: DYRGRLLYGH ILDAHAPGVD AATLLRGGWL SFSVTLQKST PFRALLHPGE KSVFLLLNGG DILTHTRPRR TRSTTTR

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.