Factsheet for TraesCS3A01G158000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G185000.1	Wheat	cytoskeleton, nucleus, plasma membrane	98.4	93.88
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	97.76	93.85
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	96.47	92.05
EES02178	Sorghum	cytosol, nucleus, peroxisome	85.58	86.97
Os01t0234900-01	Rice	cytoskeleton, nucleus, peroxisome	89.74	80.69
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	83.33	76.25
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	84.29	75.79
TraesCS4A01G148400.2	Wheat	nucleus	67.95	70.43
TraesCS2A01G129000.1	Wheat	plasma membrane	67.31	65.83
TraesCS6A01G086800.1	Wheat	nucleus	63.78	63.99
TraesCS1A01G371400.1	Wheat	cytosol	25.64	40.0
TraesCS3A01G101600.1	Wheat	nucleus	14.1	24.86
TraesCS3A01G030800.1	Wheat	cytosol	19.23	21.82
TraesCS3A01G027500.1	Wheat	plastid	18.59	21.01
TraesCS3A01G030600.1	Wheat	nucleus	18.91	20.92
TraesCS3A01G030100.1	Wheat	nucleus	19.87	20.88
TraesCS4A01G395500.1	Wheat	cytosol	18.27	20.43
TraesCS3A01G027900.1	Wheat	cytosol	17.63	20.22
TraesCS3A01G101400.1	Wheat	cytosol	13.46	20.1
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	17.63	20.07
TraesCS3A01G062700.1	Wheat	nucleus	17.63	20.0
TraesCS3A01G031100.1	Wheat	cytosol	16.99	19.7
TraesCS1A01G060800.1	Wheat	nucleus	19.23	19.54
TraesCS3A01G048300.1	Wheat	nucleus	16.99	19.34
TraesCS2A01G446400.1	Wheat	cytosol, nucleus, plastid	16.67	19.33
TraesCS3A01G032200.1	Wheat	nucleus	20.83	19.12
TraesCS3A01G062800.1	Wheat	nucleus	17.63	18.97
TraesCS3A01G031200.1	Wheat	cytosol	16.03	18.66
TraesCS3A01G031300.1	Wheat	cytosol	16.03	17.79
TraesCS5A01G228300.1	Wheat	cytosol	17.95	17.78
TraesCS4A01G395600.1	Wheat	cytosol	14.74	17.76
TraesCS5A01G531400.2	Wheat	nucleus	17.95	16.92
TraesCS4A01G369000.1	Wheat	cytosol	8.97	15.05
TraesCS2A01G586400.1	Wheat	nucleus	17.31	14.79
TraesCS2A01G589200.1	Wheat	nucleus, plastid	16.99	14.21
TraesCS1A01G070000.1	Wheat	plastid	10.9	13.99
TraesCS3A01G032100.1	Wheat	nucleus	19.23	13.16

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF73	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G158000	EnsemblPlants:TraesCS3A01G158000.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	TIGR:cd03829	TIGR:cd16571	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:-:155429154..155431604

Molecular Weight (calculated)

34739.6 Da

IEP (calculated)

7.605

GRAVY (calculated)

-0.270

Length

312 amino acids

Sequence
(BLAST)

001: MDADDVGLAL HPHGGLLAAA AASRPAAYPK AAAAAGGIVA PGSSVHELLE CPVCTNSMYP PIHQCQNGHT LCSTCKARVH NRCPTCRQEL GDIRCLALEK
101: VAESLELPCK HYSLGCPEIF PYYSKIKHEA MCSFRPYSCP YAGSECSVTG DIPYLVNHLR DDHKVDMHSG CTFNHRYVKS NPREVENATW MLTVFHCFGQ
201: YFCLHFEAFQ LGMAPVYMAF LRFMGDENEA RNYSYSLEVG ANGRKMVWEG TPRSVRDSHR KVRDSHDGLL IQRNMALFFS GGDRKELKLR ITGRIWKETQ
301: TPDGACVPVL CS

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.