Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G442300.1 | Wheat | cytosol | 94.2 | 94.89 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 93.12 | 79.57 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 72.83 | 73.9 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 62.68 | 63.14 |
| OQU86460 | Sorghum | nucleus | 41.3 | 34.13 |
| KXG32028 | Sorghum | plastid | 39.86 | 32.74 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 20.65 | 32.2 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 20.65 | 30.65 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 22.83 | 30.14 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 27.9 | 27.6 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 23.91 | 25.48 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 25.72 | 23.91 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 23.19 | 23.27 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 22.46 | 23.13 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 24.28 | 23.1 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 22.1 | 22.18 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 26.09 | 21.75 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 22.1 | 21.63 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 24.64 | 21.59 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 21.38 | 21.53 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 20.65 | 21.19 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 23.19 | 20.85 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 20.65 | 20.28 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 14.49 | 20.0 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 22.46 | 19.94 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 19.2 | 19.7 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 20.65 | 18.94 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 21.01 | 18.59 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 22.83 | 18.48 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 21.01 | 18.18 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 21.38 | 17.0 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 20.65 | 16.76 |
| TraesCS1A01G070000.1 | Wheat | plastid | 13.04 | 14.81 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 22.46 | 13.6 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 18.12 | 13.4 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 17.39 | 13.15 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3A01G027500 | EnsemblPlants:TraesCS3A01G027500.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:+:14764606..14766701
Molecular Weight (calculated)
29627.8 Da
IEP (calculated)
7.687
GRAVY (calculated)
-0.020
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKAGADRT AAAMKAGSCS RKKARVEPEA KAASSSKITV TLDPKLLECS VCCSPLVAPL SQCANGHITC FECSSDLSYS CSLCSGPANT HCSALERILG
101: GLAVPCSFQE HGCTEMIPFT EKLAHEESCL HAPCHCPIAG CCPYPGRSLC DHINAEHPTI QYTRITAGRL YPLSMRHDEP ARLVSLGSKV VFLLVVDRSI
201: PSGLTLSVIH LMSDPIEREG FKYKIQVHTQ TGILSLSGET QSVGRLRGPY QAGASLFVSN TMWSPPDSPV YLELKC
101: GLAVPCSFQE HGCTEMIPFT EKLAHEESCL HAPCHCPIAG CCPYPGRSLC DHINAEHPTI QYTRITAGRL YPLSMRHDEP ARLVSLGSKV VFLLVVDRSI
201: PSGLTLSVIH LMSDPIEREG FKYKIQVHTQ TGILSLSGET QSVGRLRGPY QAGASLFVSN TMWSPPDSPV YLELKC
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.