CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86460	Sorghum	nucleus	68.15	68.56
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	34.82	42.39
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	34.23	41.97
TraesCS3B01G442300.1	Wheat	cytosol	33.04	40.51
TraesCS3A01G027500.1	Wheat	plastid	32.74	39.86
TraesCS3A01G027900.1	Wheat	cytosol	32.14	39.71
TraesCS3B01G018000.2	Wheat	cytosol	31.55	38.97
TraesCS3D01G018100.1	Wheat	cytosol	30.95	38.81
TraesCS3D01G018300.1	Wheat	mitochondrion	34.82	36.22
TraesCS3B01G019600.1	Wheat	plastid	30.36	32.28
KXG32011	Sorghum	cytosol	21.73	30.04
KXG32010	Sorghum	extracellular	21.73	29.8
OQU86439	Sorghum	cytosol, mitochondrion, plastid	20.83	26.32
KXG32008	Sorghum	cytosol, nucleus, plastid	19.94	25.19
KXG32085	Sorghum	nucleus	14.88	22.12
OQU86434	Sorghum	endoplasmic reticulum, plasma membrane	21.13	21.78
OQU77422	Sorghum	cytosol	17.86	20.98
KXG37942	Sorghum	cytosol, nucleus, plastid	16.07	20.3
OQU78944	Sorghum	nucleus	19.35	19.94
KXG32019	Sorghum	nucleus, plastid	22.02	19.89
EES02573	Sorghum	cytosol	20.54	19.77
EES17728	Sorghum	cytosol, mitochondrion, nucleus	19.05	19.57
KXG37941	Sorghum	cytosol	16.07	19.29
EES00387	Sorghum	nucleus	18.15	19.12
KXG32009	Sorghum	nucleus	16.67	18.92
OQU84285	Sorghum	cytosol	17.26	18.65
EES02178	Sorghum	cytosol, nucleus, peroxisome	16.96	18.57
KXG32014	Sorghum	nucleus	11.9	18.18
EER92255	Sorghum	nucleus	15.77	17.55
OQU77414	Sorghum	mitochondrion, nucleus	18.45	17.51
EER97677	Sorghum	cytosol	15.18	16.89
KXG21322	Sorghum	nucleus	18.75	16.84
EES17731	Sorghum	nucleus	17.26	16.76
EES06707	Sorghum	nucleus	16.96	16.57
OQU77425	Sorghum	nucleus	18.45	16.49
EES19270	Sorghum	cytosol, nucleus, peroxisome	16.96	16.15
OQU86453	Sorghum	cytosol	10.12	15.89
EES17735	Sorghum	mitochondrion	17.86	13.36
KXG19745	Sorghum	extracellular	3.57	12.5
EES02574	Sorghum	nucleus	15.77	11.83
KXG30435	Sorghum	cytosol	3.57	11.76
KXG22272	Sorghum	cytosol	3.57	11.76

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1B6Q267	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	EnsemblPlants:KXG32028	ProteinID:KXG32028	ProteinID:KXG32028.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF35	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G092500	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI00081AC839	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:8039860..8050143

Molecular Weight (calculated)

36923.6 Da

IEP (calculated)

8.157

GRAVY (calculated)

-0.306

Length

336 amino acids

Sequence
(BLAST)

001: MRKAGPSSVS NNLTEGESST TAVFHRQMGH KALTSASGFR RTSWPNHPSI KMGGKGPRQV LQASAATKGP RRLTEVPAET SQHQAMEKIT ATINANLLQC
101: CVCSGPLTPP LFQCTKGHVS CSRCCPADGY LDDEVECLMC DEPETATRFR AMEHILVGMR MPCPFRQHGC AKMIPYASVQ AHKASCVHAP CHCPISGCTG
201: YGSKPLREHI RQDHPGVVRT IISPHCLTPL RMHAHEQARM VRLGDSDGSP EFLVIVGQYK QLGRMLSVVR LVDESVVEQD FKHRIEVVGN AGVLSLSGET
301: LDAERLKEPY KASPFLFVPN ETWDSPEGIR VFIELK

Best Arabidopsis Sequence Match ( AT5G37910.1 )
(BLAST)

001: MVLASISEAL ISQGDGGERV AKRQRSAIVL LDLDILDCPI CCEALTSPIF QCDNGHLACG SCCPKLSNKC PACTLPVGHS RSRAMESVLE SILIPCPNVR
101: FGCTKSFFYG KESAHEKECI FSQCSCPSSV CDYTGSYKDL YAHYKLTHST NIFWNIKRFR CANFFTTSML ISDKILIKRV HEKKLLLAVQ CFREPCGVYV
201: TVSFIAPSAP EVGEFSYQLS YNVDGHTVTY ESPEVKRVCK VSIETPQENF MLIPHSLLRG DLLEMQVFII ENVDQE

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.