Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 60.36 | 63.53 |
| Os01t0124900-00 | Rice | cytosol | 33.57 | 47.47 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 31.79 | 33.46 |
| KXG32009 | Sorghum | nucleus | 33.21 | 31.42 |
| EES00387 | Sorghum | nucleus | 32.5 | 28.53 |
| CDY11709 | Canola | nucleus | 15.36 | 26.06 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.64 | 24.89 |
| OQU77422 | Sorghum | cytosol | 25.36 | 24.83 |
| CDY01699 | Canola | nucleus, plastid | 24.29 | 24.11 |
| CDY36209 | Canola | plastid | 17.86 | 23.7 |
| CDY12498 | Canola | nucleus | 22.86 | 23.53 |
| KXG32011 | Sorghum | cytosol | 20.36 | 23.46 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 22.5 | 23.42 |
| CDY25763 | Canola | nucleus | 22.5 | 23.16 |
| Bra012354.1-P | Field mustard | cytosol | 22.5 | 23.16 |
| AT5G37870.1 | Thale cress | nucleus | 23.21 | 23.13 |
| AT1G66630.1 | Thale cress | cytosol | 25.0 | 23.1 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 26.79 | 22.94 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.0 | 22.83 |
| AT1G66620.1 | Thale cress | nucleus | 25.0 | 22.36 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 28.21 | 22.32 |
| Bra000425.1-P | Field mustard | nucleus | 22.5 | 22.26 |
| CDY52473 | Canola | nucleus | 22.5 | 22.18 |
| Bra018266.1-P | Field mustard | plastid | 22.86 | 22.15 |
| CDY10787 | Canola | plastid | 22.86 | 22.15 |
| KRH42263 | Soybean | nucleus | 25.0 | 21.88 |
| Bra025434.1-P | Field mustard | nucleus | 22.14 | 21.83 |
| AT5G37910.1 | Thale cress | nucleus | 21.43 | 21.74 |
| KRH58384 | Soybean | nucleus | 24.64 | 21.56 |
| CDX99687 | Canola | nucleus | 21.79 | 21.55 |
| CDY01695 | Canola | nucleus | 23.57 | 21.36 |
| Bra022858.1-P | Field mustard | nucleus | 22.86 | 21.05 |
| OQU84285 | Sorghum | cytosol | 23.21 | 20.9 |
| KXG32010 | Sorghum | extracellular | 18.21 | 20.82 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.79 | 20.75 |
| CDY47873 | Canola | nucleus | 23.93 | 20.68 |
| CDY27008 | Canola | nucleus | 24.29 | 20.67 |
| AT5G37890.1 | Thale cress | nucleus | 21.07 | 20.63 |
| OQU86453 | Sorghum | cytosol | 15.71 | 20.56 |
| EES17731 | Sorghum | nucleus | 25.36 | 20.52 |
| KXG32014 | Sorghum | nucleus | 16.07 | 20.45 |
| AT5G62800.1 | Thale cress | nucleus | 25.36 | 20.4 |
| Bra028395.1-P | Field mustard | nucleus | 23.57 | 20.37 |
| KXG21322 | Sorghum | nucleus | 27.14 | 20.32 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 21.43 | 20.2 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 21.79 | 19.87 |
| Bra004402.1-P | Field mustard | nucleus | 22.14 | 19.56 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.5 | 19.55 |
| AT5G37900.1 | Thale cress | nucleus | 16.79 | 19.5 |
| OQU77425 | Sorghum | nucleus | 26.07 | 19.41 |
| OQU78944 | Sorghum | nucleus | 22.5 | 19.33 |
| Bra004174.1-P | Field mustard | nucleus | 24.29 | 19.26 |
| AT5G37930.1 | Thale cress | nucleus | 23.93 | 19.2 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 23.93 | 19.2 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.29 | 18.89 |
| EER92255 | Sorghum | nucleus | 20.36 | 18.87 |
| OQU86460 | Sorghum | nucleus | 22.14 | 18.56 |
| EER97677 | Sorghum | cytosol | 20.0 | 18.54 |
| Solyc03g042550.1.1 | Tomato | nucleus | 23.57 | 18.33 |
| AT1G66610.1 | Thale cress | nucleus | 23.57 | 18.03 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 16.79 | 17.67 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 12.5 | 17.5 |
| PGSC0003DMT400043050 | Potato | nucleus | 23.57 | 17.32 |
| EES06707 | Sorghum | nucleus | 21.07 | 17.15 |
| AT1G66650.1 | Thale cress | nucleus | 20.0 | 17.02 |
| AT1G66660.2 | Thale cress | nucleus | 21.07 | 16.95 |
| Bra004176.1-P | Field mustard | nucleus | 20.36 | 16.91 |
| EES02573 | Sorghum | cytosol | 21.07 | 16.91 |
| CDX96138 | Canola | nucleus | 20.36 | 16.76 |
| Solyc03g034450.2.1 | Tomato | nucleus | 23.21 | 16.58 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 19.29 | 16.56 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.21 | 16.45 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 20.71 | 16.43 |
| KXG32028 | Sorghum | plastid | 19.29 | 16.07 |
| CDY36211 | Canola | nucleus | 20.71 | 16.07 |
| CDY70665 | Canola | nucleus | 18.57 | 16.05 |
| KXG32019 | Sorghum | nucleus, plastid | 21.07 | 15.86 |
| Bra019710.1-P | Field mustard | nucleus | 19.29 | 15.79 |
| KXG32085 | Sorghum | nucleus | 12.5 | 15.49 |
| EES17735 | Sorghum | mitochondrion | 24.29 | 15.14 |
| CDY01757 | Canola | cytosol | 2.5 | 13.21 |
| EES02574 | Sorghum | nucleus | 20.0 | 12.5 |
| KXG19745 | Sorghum | extracellular | 4.29 | 12.5 |
| KXG22272 | Sorghum | cytosol | 3.93 | 10.78 |
| KXG30435 | Sorghum | cytosol | 3.93 | 10.78 |
| CDY01758 | Canola | cytosol | 14.64 | 9.38 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A1B6QJ45 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 |
| InterPro:IPR013083 | EnsemblPlants:KXG37941 | ProteinID:KXG37941 | ProteinID:KXG37941.1 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3001G154700 | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI00081AE364 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:-:12419773..12423588
Molecular Weight (calculated)
30957.2 Da
IEP (calculated)
4.840
GRAVY (calculated)
-0.125
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKAMMEGV RMAMGALDCP ICNEPLVPPI YQCGMGHLIC KSCRNRMTKC PSPLCSTTDF MRCFGMERIA GAIEVPCCFA KNGCTEKMAY FNMSKHEKAC
101: QRGPCFCPEP GCGFTAPSLA IWGHFTRRHK WPCTVFRYYV EFCLLLQLGP HVLHAQDGSS VFLVNVVPAP AEPPVLGHAI SLVCVQPETS TGSKRSRFGL
201: SLMFSCFTGH HQLLTLEDVR SSSLADGLPK DVVCFVPKAS GDDSAAILRI TIDTELAYDD EKLEDDEDSE DESYEEEDDE
101: QRGPCFCPEP GCGFTAPSLA IWGHFTRRHK WPCTVFRYYV EFCLLLQLGP HVLHAQDGSS VFLVNVVPAP AEPPVLGHAI SLVCVQPETS TGSKRSRFGL
201: SLMFSCFTGH HQLLTLEDVR SSSLADGLPK DVVCFVPKAS GDDSAAILRI TIDTELAYDD EKLEDDEDSE DESYEEEDDE
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.