Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32010 | Sorghum | extracellular | 54.6 | 72.65 |
| KXG32011 | Sorghum | cytosol | 53.37 | 71.6 |
| EES02573 | Sorghum | cytosol | 55.52 | 51.86 |
| KXG32019 | Sorghum | nucleus, plastid | 57.06 | 50.0 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 30.06 | 36.84 |
| KXG32085 | Sorghum | nucleus | 18.71 | 26.99 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 18.1 | 22.18 |
| OQU86460 | Sorghum | nucleus | 22.7 | 22.16 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 17.79 | 21.8 |
| KXG32028 | Sorghum | plastid | 21.78 | 21.13 |
| KXG32009 | Sorghum | nucleus | 19.02 | 20.95 |
| EER92255 | Sorghum | nucleus | 19.33 | 20.86 |
| EER97677 | Sorghum | cytosol | 18.71 | 20.2 |
| OQU84285 | Sorghum | cytosol | 19.02 | 19.94 |
| OQU78944 | Sorghum | nucleus | 19.33 | 19.33 |
| KXG37941 | Sorghum | cytosol | 16.56 | 19.29 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 17.79 | 18.89 |
| OQU77422 | Sorghum | cytosol | 16.56 | 18.88 |
| EES00387 | Sorghum | nucleus | 17.79 | 18.18 |
| OQU86453 | Sorghum | cytosol | 11.66 | 17.76 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 19.02 | 17.51 |
| EES06707 | Sorghum | nucleus | 17.79 | 16.86 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 16.87 | 16.82 |
| KXG32014 | Sorghum | nucleus | 11.35 | 16.82 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 18.1 | 16.71 |
| OQU77425 | Sorghum | nucleus | 19.02 | 16.49 |
| EES17731 | Sorghum | nucleus | 17.48 | 16.47 |
| KXG21322 | Sorghum | nucleus | 18.4 | 16.04 |
| EES17735 | Sorghum | mitochondrion | 18.1 | 13.14 |
| KXG19745 | Sorghum | extracellular | 3.37 | 11.46 |
| EES02574 | Sorghum | nucleus | 14.42 | 10.49 |
| KXG30435 | Sorghum | cytosol | 3.07 | 9.8 |
| KXG22272 | Sorghum | cytosol | 3.07 | 9.8 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A1W0VWE8 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | EnsemblPlants:OQU86434 | ProteinID:OQU86434 |
| ProteinID:OQU86434.1 | PFAM:PF03145 | PFAM:PF13920 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF30 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3003G090900 | SUPFAM:SSF49599 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| InterPro:TRAF-like | UniParc:UPI0009DC8DC5 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:+:7926245..7927943
Molecular Weight (calculated)
35295.3 Da
IEP (calculated)
8.062
GRAVY (calculated)
0.456
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MILDAFECPI CLSLFQGSIF QCKNGHVVCD ACLVHIQGTC PSCREPVGEI RCRALEDAIA GLVVPCAFSS HGCTQLLKLK ERRDHEAFLC QHAPFACPFP
101: GCAYSASAAS APLLHDHILD AHPVDEVSSF RLAGSTWRAS VHRVRPFKVL LDHLERRVFL LLHGGDVRWG RSLSVVCLGP RPAANKPLEY KLEVGGAAGV
201: PGALSLSATG SLPCVRSWAG QYPSDGFLFV PGAYYCTSSL DCVVVKVHVD HGRALDRLAS FVRRYHAAVK PLDLLLPVVL VFVLSAMVVA FGIGFLPFLQ
301: RSVVPLPFAC RIALFSSGLC SWSLVM
101: GCAYSASAAS APLLHDHILD AHPVDEVSSF RLAGSTWRAS VHRVRPFKVL LDHLERRVFL LLHGGDVRWG RSLSVVCLGP RPAANKPLEY KLEVGGAAGV
201: PGALSLSATG SLPCVRSWAG QYPSDGFLFV PGAYYCTSSL DCVVVKVHVD HGRALDRLAS FVRRYHAAVK PLDLLLPVVL VFVLSAMVVA FGIGFLPFLQ
301: RSVVPLPFAC RIALFSSGLC SWSLVM
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.