Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G015600.1 | Wheat | cytosol | 34.09 | 25.25 |
| CDY11709 | Canola | nucleus | 18.64 | 24.85 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 33.18 | 24.58 |
| TraesCSU01G045900.1 | Wheat | cytosol | 33.18 | 24.41 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 32.73 | 24.24 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 32.73 | 23.92 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 21.36 | 23.5 |
| CDY36209 | Canola | plastid | 21.36 | 22.27 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 25.0 | 20.68 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 30.0 | 19.35 |
| Bra018266.1-P | Field mustard | plastid | 24.09 | 18.34 |
| CDY10787 | Canola | plastid | 24.09 | 18.34 |
| OQU86453 | Sorghum | cytosol | 17.73 | 18.22 |
| KXG32009 | Sorghum | nucleus | 24.09 | 17.91 |
| AT5G37910.1 | Thale cress | nucleus | 22.27 | 17.75 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 21.36 | 17.67 |
| Bra012354.1-P | Field mustard | cytosol | 20.91 | 16.91 |
| CDY25763 | Canola | nucleus | 20.91 | 16.91 |
| EER92255 | Sorghum | nucleus | 23.18 | 16.89 |
| CDY01699 | Canola | nucleus, plastid | 21.36 | 16.67 |
| Bra000425.1-P | Field mustard | nucleus | 21.36 | 16.61 |
| CDY52473 | Canola | nucleus | 21.36 | 16.55 |
| CDY12498 | Canola | nucleus | 20.45 | 16.54 |
| AT5G37890.1 | Thale cress | nucleus | 21.36 | 16.43 |
| AT1G66650.1 | Thale cress | nucleus | 24.55 | 16.41 |
| Solyc03g034460.2.1 | Tomato | nucleus | 26.82 | 16.39 |
| KXG32085 | Sorghum | nucleus | 16.82 | 16.37 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.0 | 16.36 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.82 | 16.33 |
| CDX99687 | Canola | nucleus | 20.91 | 16.25 |
| KRH42263 | Soybean | nucleus | 23.64 | 16.25 |
| KRH58384 | Soybean | nucleus | 23.64 | 16.25 |
| Bra025434.1-P | Field mustard | nucleus | 20.91 | 16.2 |
| Bra022858.1-P | Field mustard | nucleus | 22.27 | 16.12 |
| Solyc03g042550.1.1 | Tomato | nucleus | 26.36 | 16.11 |
| KXG37941 | Sorghum | cytosol | 20.45 | 16.07 |
| AT5G37870.1 | Thale cress | nucleus | 20.45 | 16.01 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.91 | 15.84 |
| Bra028395.1-P | Field mustard | nucleus | 23.18 | 15.74 |
| AT1G66620.1 | Thale cress | nucleus | 22.27 | 15.65 |
| EER97677 | Sorghum | cytosol | 21.36 | 15.56 |
| CDY27008 | Canola | nucleus | 23.18 | 15.5 |
| PGSC0003DMT400043050 | Potato | nucleus | 26.82 | 15.49 |
| CDY47873 | Canola | nucleus | 22.73 | 15.43 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 21.36 | 15.31 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 22.73 | 15.29 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 24.55 | 15.25 |
| AT1G66630.1 | Thale cress | cytosol | 20.91 | 15.18 |
| OQU84285 | Sorghum | cytosol | 21.36 | 15.11 |
| AT1G66660.2 | Thale cress | nucleus | 23.64 | 14.94 |
| Bra004402.1-P | Field mustard | nucleus | 21.36 | 14.83 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 20.0 | 14.81 |
| KXG32011 | Sorghum | cytosol | 16.36 | 14.81 |
| CDY70665 | Canola | nucleus | 21.82 | 14.81 |
| Solyc03g034450.2.1 | Tomato | nucleus | 26.36 | 14.8 |
| KXG32010 | Sorghum | extracellular | 16.36 | 14.69 |
| CDY01695 | Canola | nucleus | 20.45 | 14.56 |
| EES06707 | Sorghum | nucleus | 22.73 | 14.53 |
| OQU78944 | Sorghum | nucleus | 21.36 | 14.42 |
| OQU77422 | Sorghum | cytosol | 18.64 | 14.34 |
| Bra019710.1-P | Field mustard | nucleus | 22.27 | 14.33 |
| AT5G37930.1 | Thale cress | nucleus | 22.73 | 14.33 |
| Solyc03g042520.1.1 | Tomato | nucleus | 20.0 | 14.19 |
| KXG21322 | Sorghum | nucleus | 24.09 | 14.17 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 22.73 | 14.16 |
| CDX96138 | Canola | nucleus | 21.82 | 14.12 |
| AT5G37900.1 | Thale cress | nucleus | 15.45 | 14.11 |
| AT5G62800.1 | Thale cress | nucleus | 22.27 | 14.08 |
| Bra004176.1-P | Field mustard | nucleus | 21.36 | 13.95 |
| EES00387 | Sorghum | nucleus | 20.0 | 13.79 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 21.82 | 13.75 |
| Bra004174.1-P | Field mustard | nucleus | 21.82 | 13.6 |
| EES17731 | Sorghum | nucleus | 20.91 | 13.29 |
| CDY36211 | Canola | nucleus | 21.36 | 13.02 |
| AT1G66610.1 | Thale cress | nucleus | 20.91 | 12.57 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 15.0 | 12.41 |
| KXG32028 | Sorghum | plastid | 18.18 | 11.9 |
| OQU86460 | Sorghum | nucleus | 17.73 | 11.68 |
| PGSC0003DMT400043047 | Potato | cytosol | 9.55 | 11.41 |
| EES17735 | Sorghum | mitochondrion | 23.18 | 11.36 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 16.82 | 11.35 |
| EES02573 | Sorghum | cytosol | 17.73 | 11.17 |
| KXG32019 | Sorghum | nucleus, plastid | 18.64 | 11.02 |
| OQU77425 | Sorghum | nucleus | 18.64 | 10.9 |
| CDY01758 | Canola | cytosol | 19.09 | 9.61 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 7.73 | 9.5 |
| KXG30435 | Sorghum | cytosol | 4.09 | 8.82 |
| KXG22272 | Sorghum | cytosol | 4.09 | 8.82 |
| EES02574 | Sorghum | nucleus | 16.82 | 8.26 |
| KXG19745 | Sorghum | extracellular | 2.73 | 6.25 |
| CDY01757 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1B6Q272 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | EnsemblPlants:KXG32014 | ProteinID:KXG32014 |
| ProteinID:KXG32014.1 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3003G090600 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00081AC2DC | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:-:7885851..7891196
Molecular Weight (calculated)
24318.1 Da
IEP (calculated)
8.350
GRAVY (calculated)
-0.520
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPRHRERRG RSLSSAEEEG GGTKTSATCS EKPGQERRAQ MAAEMVGGPK EGGEGDAGRP DSEIFAKLDP RLLDCIICSE PLRPPIFQCE IGHVLCFVCR
101: GKLRSNLCPT CFQAIGFNCC FAIEQMTDAV KVPCSNSYFG CDEYITYYQK EKHEKTCMHA PCFAQKMVAH LKDRRHRFSI ILSPSTNGLP QTSIMTRRRG
201: FPSHGTAGSC SWSGRTSPCS
101: GKLRSNLCPT CFQAIGFNCC FAIEQMTDAV KVPCSNSYFG CDEYITYYQK EKHEKTCMHA PCFAQKMVAH LKDRRHRFSI ILSPSTNGLP QTSIMTRRRG
201: FPSHGTAGSC SWSGRTSPCS
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.