Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96138 | Canola | nucleus | 81.72 | 86.76 |
| AT1G66660.2 | Thale cress | nucleus | 44.88 | 46.55 |
| CDY70665 | Canola | nucleus | 34.9 | 38.89 |
| CDY12498 | Canola | nucleus | 28.25 | 37.5 |
| CDY25763 | Canola | nucleus | 27.7 | 36.76 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 9.14 | 36.26 |
| CDY27008 | Canola | nucleus | 32.96 | 36.17 |
| CDY47873 | Canola | nucleus | 31.86 | 35.49 |
| CDY11709 | Canola | nucleus | 15.79 | 34.55 |
| CDY01699 | Canola | nucleus, plastid | 25.48 | 32.62 |
| CDY10787 | Canola | plastid | 26.04 | 32.53 |
| CDY52473 | Canola | nucleus | 25.21 | 32.04 |
| CDX99687 | Canola | nucleus | 24.93 | 31.8 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 24.93 | 30.61 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 24.65 | 29.97 |
| KRH58384 | Soybean | nucleus | 24.93 | 28.12 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 27.15 | 28.08 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.17 | 28.05 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 13.85 | 27.93 |
| CDY36209 | Canola | plastid | 16.07 | 27.49 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 16.07 | 27.1 |
| KRH42263 | Soybean | nucleus | 23.82 | 26.88 |
| CDY01695 | Canola | nucleus | 22.71 | 26.54 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 14.68 | 26.5 |
| CDY01757 | Canola | cytosol | 3.88 | 26.42 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.39 | 26.32 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.02 | 25.54 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 17.17 | 24.6 |
| PGSC0003DMT400043050 | Potato | nucleus | 25.76 | 24.41 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 18.56 | 24.36 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.1 | 24.17 |
| Solyc03g042550.1.1 | Tomato | nucleus | 23.55 | 23.61 |
| CDY67278 | Canola | cytosol | 5.26 | 23.46 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 18.28 | 23.4 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 17.17 | 23.4 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 18.01 | 23.05 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 17.45 | 22.99 |
| Solyc03g034450.2.1 | Tomato | nucleus | 24.93 | 22.96 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 17.73 | 22.78 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 17.73 | 22.7 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 17.17 | 22.63 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 17.17 | 22.63 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 17.17 | 22.63 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 18.56 | 22.33 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 16.9 | 22.26 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 16.9 | 22.18 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 18.28 | 22.07 |
| KXG32009 | Sorghum | nucleus | 18.01 | 21.96 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 16.62 | 21.82 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 15.24 | 21.74 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 16.07 | 21.56 |
| CDX97399 | Canola | nucleus | 19.11 | 21.5 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 19.67 | 21.45 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 15.79 | 21.43 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 19.94 | 21.43 |
| KXG32014 | Sorghum | nucleus | 13.02 | 21.36 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 16.62 | 21.28 |
| CDY43950 | Canola | nucleus | 19.11 | 21.23 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 16.34 | 21.22 |
| CDY06889 | Canola | cytosol | 17.45 | 21.21 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 18.01 | 21.17 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 17.17 | 21.16 |
| CDX67865 | Canola | nucleus | 18.84 | 21.05 |
| CDY25077 | Canola | nucleus | 18.84 | 21.05 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 14.4 | 21.05 |
| CDX92848 | Canola | nucleus | 17.73 | 20.98 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.01 | 20.97 |
| CDY14268 | Canola | nucleus | 18.56 | 20.94 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 16.9 | 20.89 |
| CDX89132 | Canola | cytosol | 18.84 | 20.86 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 16.34 | 20.77 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 18.84 | 20.73 |
| KXG37941 | Sorghum | cytosol | 16.07 | 20.71 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 16.62 | 20.69 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 17.17 | 20.67 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 15.79 | 20.58 |
| OQU78944 | Sorghum | nucleus | 18.56 | 20.55 |
| CDY35390 | Canola | nucleus | 17.45 | 20.52 |
| CDX89221 | Canola | nucleus | 18.28 | 20.5 |
| CDY19018 | Canola | nucleus | 18.28 | 20.5 |
| CDY57244 | Canola | cytosol | 17.45 | 20.45 |
| CDX71977 | Canola | cytosol | 17.45 | 20.32 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 17.73 | 20.32 |
| CDY67927 | Canola | cytosol | 17.45 | 20.26 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 16.34 | 20.21 |
| CDY14808 | Canola | cytosol | 16.9 | 20.2 |
| CDY22549 | Canola | nucleus | 17.17 | 20.06 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 18.84 | 20.0 |
| CDX88968 | Canola | cytosol | 17.17 | 19.94 |
| Zm00001d041049_P001 | Maize | nucleus | 18.01 | 19.88 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 16.9 | 19.87 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 16.07 | 19.86 |
| EES00387 | Sorghum | nucleus | 17.45 | 19.75 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 16.34 | 19.6 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 19.39 | 19.55 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 16.07 | 19.53 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 14.4 | 19.4 |
| CDY56244 | Canola | cytosol | 15.51 | 19.38 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 15.79 | 19.19 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 18.01 | 19.12 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 18.01 | 19.12 |
| CDY06056 | Canola | cytosol | 13.85 | 19.08 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 14.13 | 18.96 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 14.68 | 18.93 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 17.73 | 18.88 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 15.51 | 18.86 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 16.9 | 18.65 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 14.4 | 18.57 |
| TraesCSU01G045900.1 | Wheat | cytosol | 15.24 | 18.39 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 16.9 | 18.37 |
| OQU86453 | Sorghum | cytosol | 10.8 | 18.22 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 16.9 | 18.21 |
| OQU77422 | Sorghum | cytosol | 14.4 | 18.18 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 17.17 | 17.61 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 13.57 | 17.44 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 16.9 | 17.23 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 17.17 | 16.62 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 17.17 | 16.53 |
| OQU77425 | Sorghum | nucleus | 17.17 | 16.49 |
| EES17731 | Sorghum | nucleus | 15.79 | 16.47 |
| HORVU2Hr1G118840.1 | Barley | plastid | 16.9 | 16.44 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 16.9 | 16.27 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 8.86 | 16.0 |
| EES17735 | Sorghum | mitochondrion | 19.39 | 15.59 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 19.39 | 15.25 |
| KXG21322 | Sorghum | nucleus | 15.79 | 15.24 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 19.11 | 15.13 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 14.13 | 14.96 |
| CDX82523 | Canola | cytosol | 8.86 | 14.95 |
| CDX75727 | Canola | cytosol | 8.59 | 14.49 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 16.07 | 14.32 |
| TraesCSU01G021700.1 | Wheat | nucleus | 14.4 | 14.25 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 18.01 | 14.01 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 14.13 | 13.97 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 14.13 | 13.97 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 12.47 | 13.64 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 10.25 | 13.41 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 14.13 | 13.35 |
| TraesCSU01G231400.1 | Wheat | nucleus | 12.74 | 13.29 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 8.03 | 13.12 |
| TraesCS1A01G070000.1 | Wheat | plastid | 8.59 | 12.76 |
| EES02574 | Sorghum | nucleus | 15.79 | 12.72 |
| CDY01758 | Canola | cytosol | 14.4 | 11.9 |
| CDY38819 | Canola | nucleus | 6.37 | 11.86 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 9.14 | 11.58 |
| CDY64066 | Canola | cytosol | 3.05 | 10.19 |
| CDY67899 | Canola | cytosol, plastid | 3.88 | 8.43 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.55 | 2.02 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078HEK9 | UniProt:A0A078HEK9 | EnsemblPlants:CDY36211 | ProteinID:CDY36211 | ProteinID:CDY36211.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00060121001 |
| InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 |
| InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EDDB41 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g27550DE3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A078HEK9]
Coordinates
chrLK032370:-:40729..42846
Molecular Weight (calculated)
40325.0 Da
IEP (calculated)
4.918
GRAVY (calculated)
-0.381
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPLRNPDH RSPKRPRFPL PPPVPEEEEE EEDEFSDVSA DDEEDCSDES ADDEEDDVEV VAVVTVAEAQ SRRSVGSSSS NPSSPVKLNS SEILDCPTCL
101: EPLRGPIYQC VNGHITCSPC LPRVYKQCPV CRIPIGNIRC RAMEMVIESS AVPCRYAIYG CKETTLYGDQ AHEKVCPYIR CQCPVTNCSY TGAYKEVEAH
201: ARLQHSWDVE HLIPFVFNTP QIFSINLART SRAVFQEEKE GDMIVVQTFK RTNGGVCVTV SHIAPLSLGL RNLSCSLAKL NAYTTLRLGV MVKKIQKLRE
301: QEEPREDFLF IPDYMLSDNH LKMQICVGSE FKCTGLELGV TEQNSVPCRS AKHCCAEKQG C
101: EPLRGPIYQC VNGHITCSPC LPRVYKQCPV CRIPIGNIRC RAMEMVIESS AVPCRYAIYG CKETTLYGDQ AHEKVCPYIR CQCPVTNCSY TGAYKEVEAH
201: ARLQHSWDVE HLIPFVFNTP QIFSINLART SRAVFQEEKE GDMIVVQTFK RTNGGVCVTV SHIAPLSLGL RNLSCSLAKL NAYTTLRLGV MVKKIQKLRE
301: QEEPREDFLF IPDYMLSDNH LKMQICVGSE FKCTGLELGV TEQNSVPCRS AKHCCAEKQG C
001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.