Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G504900.1 | Wheat | nucleus | 85.09 | 85.4 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 81.45 | 80.58 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 23.64 | 71.43 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 55.27 | 57.14 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 35.27 | 38.49 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 31.64 | 32.83 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 33.82 | 31.0 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 32.73 | 30.0 |
| CDY11709 | Canola | nucleus | 17.45 | 29.09 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 35.27 | 28.61 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.55 | 28.05 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 33.82 | 28.01 |
| CDY01699 | Canola | nucleus, plastid | 27.27 | 26.6 |
| CDY12498 | Canola | nucleus | 26.18 | 26.47 |
| CDY36209 | Canola | plastid | 20.0 | 26.07 |
| CDX99687 | Canola | nucleus | 26.55 | 25.8 |
| CDY25763 | Canola | nucleus | 25.45 | 25.74 |
| Bra012354.1-P | Field mustard | cytosol | 25.45 | 25.74 |
| CDY52473 | Canola | nucleus | 26.55 | 25.7 |
| Bra025434.1-P | Field mustard | nucleus | 26.55 | 25.7 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 25.09 | 25.65 |
| PGSC0003DMT400043047 | Potato | cytosol | 17.09 | 25.54 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 27.27 | 25.51 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 25.82 | 25.36 |
| AT5G37900.1 | Thale cress | nucleus | 22.18 | 25.31 |
| AT5G37870.1 | Thale cress | nucleus | 25.82 | 25.27 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 27.27 | 25.25 |
| KRH58384 | Soybean | nucleus | 29.09 | 25.0 |
| KRH42263 | Soybean | nucleus | 29.09 | 25.0 |
| AT5G37890.1 | Thale cress | nucleus | 25.82 | 24.83 |
| Bra000425.1-P | Field mustard | nucleus | 25.09 | 24.38 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 24.36 | 23.93 |
| AT5G37910.1 | Thale cress | nucleus | 24.0 | 23.91 |
| AT1G66630.1 | Thale cress | cytosol | 26.18 | 23.76 |
| Bra004402.1-P | Field mustard | nucleus | 27.27 | 23.66 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 17.09 | 23.5 |
| Bra022858.1-P | Field mustard | nucleus | 25.82 | 23.36 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 28.73 | 23.17 |
| AT1G66620.1 | Thale cress | nucleus | 26.18 | 23.0 |
| Bra018266.1-P | Field mustard | plastid | 23.27 | 22.15 |
| CDY10787 | Canola | plastid | 23.27 | 22.15 |
| CDY47873 | Canola | nucleus | 25.82 | 21.91 |
| Bra028395.1-P | Field mustard | nucleus | 25.82 | 21.91 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 14.18 | 21.79 |
| Solyc03g042550.1.1 | Tomato | nucleus | 28.36 | 21.67 |
| AT5G62800.1 | Thale cress | nucleus | 27.27 | 21.55 |
| Bra004174.1-P | Field mustard | nucleus | 27.64 | 21.53 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 27.27 | 21.49 |
| Solyc03g034460.2.1 | Tomato | nucleus | 28.0 | 21.39 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 21.82 | 21.05 |
| CDY01695 | Canola | nucleus | 23.64 | 21.04 |
| CDY27008 | Canola | nucleus | 25.09 | 20.97 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 25.09 | 20.91 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 23.64 | 20.9 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 21.45 | 20.56 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 26.55 | 20.39 |
| AT5G37930.1 | Thale cress | nucleus | 25.82 | 20.34 |
| PGSC0003DMT400043050 | Potato | nucleus | 28.0 | 20.21 |
| Solyc03g042520.1.1 | Tomato | nucleus | 22.18 | 19.68 |
| AT1G66650.1 | Thale cress | nucleus | 23.27 | 19.45 |
| AT1G66610.1 | Thale cress | nucleus | 25.82 | 19.4 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 14.55 | 19.23 |
| Solyc03g034450.2.1 | Tomato | nucleus | 27.27 | 19.13 |
| HORVU3Hr1G018420.2 | Barley | plastid | 21.82 | 18.93 |
| CDY70665 | Canola | nucleus | 22.18 | 18.83 |
| Bra019710.1-P | Field mustard | nucleus | 22.91 | 18.42 |
| HORVU2Hr1G118840.1 | Barley | plastid | 24.73 | 18.33 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 21.45 | 18.04 |
| AT1G66660.2 | Thale cress | nucleus | 22.18 | 17.53 |
| Bra004176.1-P | Field mustard | nucleus | 21.45 | 17.51 |
| CDX96138 | Canola | nucleus | 21.45 | 17.35 |
| CDY36211 | Canola | nucleus | 22.18 | 16.9 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 21.82 | 15.83 |
| HORVU1Hr1G033130.2 | Barley | plastid | 21.45 | 14.64 |
| CDY01757 | Canola | cytosol | 2.18 | 11.32 |
| CDY01758 | Canola | cytosol | 16.73 | 10.53 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU4Hr1G056260 | EnsemblPlants:HORVU4Hr1G056260.1 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M0UGH5 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000295B121 | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:M0UGH5]
Coordinates
chrchr4H:-:472591753..472593707
Molecular Weight (calculated)
30596.9 Da
IEP (calculated)
6.793
GRAVY (calculated)
-0.200
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAQQQQQET KGEEVEEGGV GKRRKVATDV TMDLDILDCP VCFLPLRPPI FQCTVGHTIC SSCRNMLTDK CCLCSLPTVY NRCHMVENVV ESIKLACPNT
101: SHGCTARINY YQKEDHEKRC QYAPCFCPET GCSFSGPTEV LREHFLTEHD WCYGENNLRY GKTYRIKTLL GVLGPTVLTS NDGHLFLINM TMESLGGVIS
201: VCCIEPHNSG SRFKCRLALS CGEPSFSQTM EFLTRSTNLH HGFPKDCIPF LVPKVLLQGT GTNPTATVLV TLEPQ
101: SHGCTARINY YQKEDHEKRC QYAPCFCPET GCSFSGPTEV LREHFLTEHD WCYGENNLRY GKTYRIKTLL GVLGPTVLTS NDGHLFLINM TMESLGGVIS
201: VCCIEPHNSG SRFKCRLALS CGEPSFSQTM EFLTRSTNLH HGFPKDCIPF LVPKVLLQGT GTNPTATVLV TLEPQ
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.