Factsheet for HORVU1Hr1G033130.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	61.79	98.81
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	83.13	96.54
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	75.93	88.7
HORVU7Hr1G082100.1	Barley	nucleus	63.03	88.5
EES19270	Sorghum	cytosol, nucleus, peroxisome	77.17	88.1
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	77.42	86.43
TraesCS1B01G152800.1	Wheat	plastid	86.35	85.5
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	69.23	85.32
HORVU6Hr1G016120.2	Barley	nucleus	51.36	66.56
HORVU2Hr1G022590.1	Barley	nucleus	53.35	56.73
HORVU3Hr1G005260.1	Barley	cytosol	8.93	39.56
HORVU4Hr1G056260.1	Barley	nucleus	14.64	21.45
HORVU3Hr1G005320.1	Barley	nucleus	13.9	21.13
HORVU7Hr1G021160.2	Barley	cytosol	14.64	20.7
HORVU3Hr1G018640.1	Barley	cytosol	10.67	20.67
HORVU3Hr1G004950.1	Barley	nucleus	15.38	20.67
HORVU3Hr1G004860.1	Barley	cytosol	12.66	20.24
HORVU3Hr1G004890.1	Barley	nucleus	14.39	19.33
HORVU2Hr1G118560.2	Barley	nucleus	13.15	18.93
HORVU0Hr1G006120.2	Barley	cytosol, nucleus, plastid	13.15	18.93
HORVU3Hr1G018420.2	Barley	plastid	14.64	18.61
HORVU3Hr1G004880.2	Barley	nucleus	15.63	18.58
HORVU1Hr1G012490.3	Barley	nucleus	14.89	18.07
HORVU3Hr1G005270.1	Barley	nucleus	13.9	16.42
HORVU4Hr1G087120.3	Barley	nucleus	14.14	15.92
HORVU2Hr1G118840.1	Barley	plastid	13.65	14.82
HORVU0Hr1G006130.1	Barley	nucleus	11.66	14.24

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:AK364064	UniProt:F2DJJ6
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:HORVU1Hr1G033130	EnsemblPlants:HORVU1Hr1G033130.2	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00020065D6	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F2DJJ6]

Coordinates

chrchr1H:-:207381952..207416077

Molecular Weight (calculated)

44567.0 Da

IEP (calculated)

7.846

GRAVY (calculated)

-0.471

Length

403 amino acids

Sequence
(BLAST)

001: MRAVPLPRRP VPNQTNPDYP KATNPPRRPG ASVLNSQRNQ EKHGDGRRGT RAGEATMDMD SVECLSLPDA SMDVDDVNSH QQYHHHNSIP IHPVHLAASG
101: GVGGRAFAKM NAGAAAAAGG VGATAGAAGG PPATSVHELL ECPVCINSMF PPIHQCQNGH TLCSTCKARV HNRCPTCRQE LGDIRCLALE KVAESLELPC
201: KYCSLGCPEI FPYYSKIKHE GQCSFRPYNC PYAGSECAVA GDIPFLVAHL RDDHKVDMHS GCTFNHRYVK SNPREVENAT WMLTVFHCFG QYFCLHFEAF
301: QLGMAPVYMA FLRFMGDENE ARNYTYSLEV GGNGRKMVWE GTPRSIRDSH RKVRDSHDGL IIQRNMALFF SGGDRKELKL RVTGRIWKEQ PNPDETCIPN
401: LCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.