Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049960.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | HORVU1Hr1G049960.6 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G060800.1 | Wheat | nucleus | 74.7 | 80.78 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 85.24 | 80.4 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 59.34 | 65.67 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 50.9 | 56.33 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 52.11 | 51.03 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 12.65 | 46.15 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 32.53 | 40.75 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 27.41 | 36.11 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 28.01 | 33.82 |
| CDY11709 | Canola | nucleus | 16.27 | 32.73 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 25.9 | 30.71 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 28.31 | 28.48 |
| CDY52473 | Canola | nucleus | 21.99 | 25.7 |
| CDX99687 | Canola | nucleus | 21.69 | 25.44 |
| Bra025434.1-P | Field mustard | nucleus | 21.69 | 25.35 |
| CDY01699 | Canola | nucleus, plastid | 21.39 | 25.18 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.57 | 24.89 |
| CDY36209 | Canola | plastid | 15.66 | 24.64 |
| Bra000425.1-P | Field mustard | nucleus | 20.78 | 24.38 |
| CDY12498 | Canola | nucleus | 19.88 | 24.26 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.25 | 23.91 |
| Bra012354.1-P | Field mustard | cytosol | 19.58 | 23.9 |
| CDY25763 | Canola | nucleus | 19.58 | 23.9 |
| Bra018266.1-P | Field mustard | plastid | 20.78 | 23.88 |
| CDY10787 | Canola | plastid | 20.78 | 23.88 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.28 | 23.79 |
| Bra004174.1-P | Field mustard | nucleus | 24.7 | 23.23 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 24.4 | 23.21 |
| AT1G66630.1 | Thale cress | cytosol | 20.78 | 22.77 |
| AT1G66620.1 | Thale cress | nucleus | 21.39 | 22.68 |
| AT5G37870.1 | Thale cress | nucleus | 18.98 | 22.42 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.05 | 22.35 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 13.86 | 22.12 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 19.58 | 22.11 |
| Bra022858.1-P | Field mustard | nucleus | 20.18 | 22.04 |
| AT5G37890.1 | Thale cress | nucleus | 18.98 | 22.03 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.25 | 22.0 |
| CDY47873 | Canola | nucleus | 21.08 | 21.6 |
| Bra028395.1-P | Field mustard | nucleus | 21.08 | 21.6 |
| AT1G66650.1 | Thale cress | nucleus | 21.39 | 21.58 |
| AT5G37900.1 | Thale cress | nucleus | 15.66 | 21.58 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 21.99 | 21.41 |
| HORVU7Hr1G021160.2 | Barley | cytosol | 18.37 | 21.4 |
| CDY27008 | Canola | nucleus | 21.08 | 21.28 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.67 | 20.88 |
| HORVU7Hr1G082100.1 | Barley | nucleus | 17.77 | 20.56 |
| AT5G37930.1 | Thale cress | nucleus | 21.39 | 20.34 |
| KRH42263 | Soybean | nucleus | 19.58 | 20.31 |
| AT5G37910.1 | Thale cress | nucleus | 16.87 | 20.29 |
| Solyc03g034460.2.1 | Tomato | nucleus | 21.99 | 20.28 |
| Bra004402.1-P | Field mustard | nucleus | 19.28 | 20.19 |
| AT5G62800.1 | Thale cress | nucleus | 21.08 | 20.11 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 21.69 | 20.11 |
| KRH58384 | Soybean | nucleus | 19.28 | 20.0 |
| HORVU6Hr1G016120.2 | Barley | nucleus | 18.67 | 19.94 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 16.57 | 19.64 |
| Solyc03g042550.1.1 | Tomato | nucleus | 21.08 | 19.44 |
| PGSC0003DMT400043050 | Potato | nucleus | 22.29 | 19.42 |
| AT1G66610.1 | Thale cress | nucleus | 21.39 | 19.4 |
| HORVU3Hr1G018420.2 | Barley | plastid | 18.37 | 19.24 |
| CDY70665 | Canola | nucleus | 18.07 | 18.52 |
| CDY01695 | Canola | nucleus | 17.17 | 18.45 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.39 | 18.11 |
| Solyc03g042520.1.1 | Tomato | nucleus | 16.87 | 18.06 |
| Bra019710.1-P | Field mustard | nucleus | 18.37 | 17.84 |
| AT1G66660.2 | Thale cress | nucleus | 18.67 | 17.82 |
| Bra004176.1-P | Field mustard | nucleus | 18.07 | 17.8 |
| HORVU3Hr1G032110.2 | Barley | cytoskeleton, nucleus, plasma membrane | 17.47 | 17.74 |
| CDX96138 | Canola | nucleus | 17.77 | 17.35 |
| CDY36211 | Canola | nucleus | 18.37 | 16.9 |
| HORVU2Hr1G022590.1 | Barley | nucleus | 18.98 | 16.62 |
| HORVU2Hr1G118840.1 | Barley | plastid | 18.07 | 16.17 |
| HORVU1Hr1G033130.2 | Barley | plastid | 18.07 | 14.89 |
| CDY01757 | Canola | cytosol | 2.11 | 13.21 |
| CDY01758 | Canola | cytosol | 13.25 | 10.07 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | UniProt:A0A287ENK8 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:HORVU1Hr1G012490 |
| EnsemblPlants:HORVU1Hr1G012490.3 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI000B479B0E | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287ENK8]
Coordinates
chrchr1H:-:31357005..31359183
Molecular Weight (calculated)
36862.1 Da
IEP (calculated)
4.274
GRAVY (calculated)
-0.452
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MAINGSSSSK RKVEARPEGE SSSKKLNVTV GFETLDCTIC FVPLRPPIFQ CSVGHFICFE CKDQLDYKCP TCYIKTSFKR CFGMEHVVQS VTVACSNDKY
101: GCAEKVTYYQ KEEHKKACPN APCFCPESGC ELAGPTKVLL DHLTTQHKCP STNLPDSGTV CLRLQPGLHV LQCTDTSYFF LLNMASEPFG HAISVVCVQP
201: NVTEFRFVCN MSYDCITTGC CGSASCHIRS SSLSDGLPTV YDLILPKGKV SDGENGIMLK ATIHRQPLGL GRSCFRELGP IPALEQRPDT YDVEEKDDDD
301: EEEEEEEVED DEVEDDEEEE EGEVEDNDND DE
101: GCAEKVTYYQ KEEHKKACPN APCFCPESGC ELAGPTKVLL DHLTTQHKCP STNLPDSGTV CLRLQPGLHV LQCTDTSYFF LLNMASEPFG HAISVVCVQP
201: NVTEFRFVCN MSYDCITTGC CGSASCHIRS SSLSDGLPTV YDLILPKGKV SDGENGIMLK ATIHRQPLGL GRSCFRELGP IPALEQRPDT YDVEEKDDDD
301: EEEEEEEVED DEVEDDEEEE EGEVEDNDND DE
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.