Factsheet for HORVU7Hr1G021160.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G395600.1	Wheat	cytosol	72.63	79.92
TraesCS4A01G395500.1	Wheat	cytosol	72.63	74.19
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	51.23	48.34
HORVU3Hr1G018640.1	Barley	cytosol	32.63	44.71
HORVU3Hr1G018420.2	Barley	plastid	42.81	38.49
KXG32085	Sorghum	nucleus	28.42	35.84
HORVU3Hr1G005260.1	Barley	cytosol	10.18	31.87
HORVU4Hr1G056260.1	Barley	nucleus	21.05	21.82
HORVU3Hr1G005320.1	Barley	nucleus	20.0	21.51
HORVU4Hr1G087120.3	Barley	nucleus	26.67	21.23
HORVU3Hr1G004950.1	Barley	nucleus	22.11	21.0
HORVU6Hr1G016120.2	Barley	nucleus	22.11	20.26
HORVU7Hr1G082100.1	Barley	nucleus	20.35	20.21
HORVU3Hr1G004860.1	Barley	cytosol	17.19	19.44
HORVU3Hr1G004890.1	Barley	nucleus	20.35	19.33
HORVU3Hr1G004880.2	Barley	nucleus	22.81	19.17
HORVU0Hr1G006120.2	Barley	cytosol, nucleus, plastid	18.25	18.57
HORVU3Hr1G005270.1	Barley	nucleus	22.11	18.48
HORVU1Hr1G012490.3	Barley	nucleus	21.4	18.37
HORVU3Hr1G032110.2	Barley	cytoskeleton, nucleus, plasma membrane	21.05	18.35
HORVU0Hr1G006130.1	Barley	nucleus	20.0	17.27
HORVU2Hr1G118560.2	Barley	nucleus	16.14	16.43
HORVU2Hr1G022590.1	Barley	nucleus	21.05	15.83
HORVU1Hr1G033130.2	Barley	plastid	20.7	14.64
HORVU2Hr1G118840.1	Barley	plastid	18.25	14.02

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU7Hr1G021160	EnsemblPlants:HORVU7Hr1G021160.2	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	UniProt:M0YTG7	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF30	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000294E182	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:M0YTG7]

Coordinates

chrchr7H:+:29565540..29566921

Molecular Weight (calculated)

31610.2 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.255

Length

285 amino acids

Sequence
(BLAST)

001: MNGTGMMKQS TKKARTAPVI GGRPDVPRGR GEETVEESAN AYTVEADGLG CEICFEPFGD QIFMCKNGHP ACGTCCIRMD RICFCAEPIG DIRCRPLEKV
101: LAAMTRPCTY ASYGCREIVS YTGRRSHEED CPYTPYYCPF DGCTYHGMQL YNHIHDRHAA SAVVVPTGSR RVAVRLEKKM PFRVLLHGDG ARVFLLLNGG
201: EVLSGRSLSL VCMSPRPMGK AEARYKMEVK HWRSAPDTPV LLSSGAAPLV RRLKDFQARG FLFVPDSYWN IGDTVSVTVH LTDGW

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.