Factsheet for TraesCS4A01G395500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G395600.1	Wheat	cytosol	67.74	72.97
HORVU7Hr1G021160.2	Barley	cytosol	74.19	72.63
TraesCS3A01G101600.1	Wheat	nucleus	31.9	50.28
TraesCS3A01G101400.1	Wheat	cytosol	35.48	47.37
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	50.18	46.36
TraesCS4A01G369000.1	Wheat	cytosol	29.39	44.09
KXG32085	Sorghum	nucleus	27.24	33.63
TraesCS3A01G027900.1	Wheat	cytosol	27.96	28.68
TraesCS3A01G027500.1	Wheat	plastid	27.6	27.9
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	26.16	26.64
TraesCS3A01G030100.1	Wheat	nucleus	25.45	23.91
TraesCS5A01G531400.2	Wheat	nucleus	25.81	21.75
TraesCS3A01G030600.1	Wheat	nucleus	21.15	20.92
TraesCS3A01G031100.1	Wheat	cytosol	20.07	20.82
TraesCS3A01G030800.1	Wheat	cytosol	20.07	20.36
TraesCS1A01G060800.1	Wheat	nucleus	21.86	19.87
TraesCS3A01G031200.1	Wheat	cytosol	19.0	19.78
TraesCS2A01G446400.1	Wheat	cytosol, nucleus, plastid	19.0	19.7
TraesCS3A01G048300.1	Wheat	nucleus	18.64	18.98
TraesCS6A01G086800.1	Wheat	nucleus	21.15	18.97
TraesCS3A01G062700.1	Wheat	nucleus	18.64	18.91
TraesCS3A01G062800.1	Wheat	nucleus	19.35	18.62
TraesCS4A01G148400.2	Wheat	nucleus	20.07	18.6
TraesCS3A01G031300.1	Wheat	cytosol	18.64	18.51
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	20.43	18.27
TraesCS5A01G228300.1	Wheat	cytosol	20.07	17.78
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	21.51	17.6
TraesCS3A01G032200.1	Wheat	nucleus	21.15	17.35
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	21.51	17.29
TraesCS2A01G129000.1	Wheat	plasma membrane	19.71	17.24
TraesCS1A01G371400.1	Wheat	cytosol	12.19	17.0
TraesCS1A01G070000.1	Wheat	plastid	13.62	15.64
TraesCS2A01G586400.1	Wheat	nucleus	17.56	13.42
TraesCS2A01G589200.1	Wheat	nucleus, plastid	17.92	13.4
TraesCS3A01G032100.1	Wheat	nucleus	21.15	12.94

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF30	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS4A01G395500	EnsemblPlants:TraesCS4A01G395500.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:670215416..670216339

Molecular Weight (calculated)

31003.1 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.327

Length

279 amino acids

Sequence
(BLAST)

001: METQSAKKAR TPPPNVPQEE ESTNASNMPR GGTSQEYTVE ADGLGCEICF EPFDDQIFMC KNGHPACGTC CIRMDRLCFC TDPIGDIRCR PLEKILAAMT
101: RPCAYVTYGC KEIVSYSGRR SHEKVCPFAP YHCPFDGCTY QGLEVYTHIR DRHAPSAVIV RGGSQRLDVT LEKKTPFRVL LHRDGASVFL LLNGGDVLCG
201: RSLSLVCMGP RPTGNAGVKY KMEVKRRSDP DAPVLWSSGA APFVRRLKDF HAKGFLFVPD SYWDSYDSVS VTVHLTDGW

Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)

001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.