Factsheet for TraesCS2A01G129000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G131700.1	Wheat	cytosol	94.36	100.0
EER97677	Sorghum	cytosol	86.52	91.39
Zm00001d022401_P002	Maize	cytosol	85.89	90.73
Os07t0659800-01	Rice	cytosol	85.27	90.07
TraesCS4A01G148400.2	Wheat	nucleus	83.39	88.37
TraesCS2B01G151100.1	Wheat	plasma membrane	96.87	88.29
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	81.19	84.92
KRH13409	Soybean	cytosol	79.31	83.22
HORVU2Hr1G022590.1	Barley	nucleus	95.3	80.21
GSMUA_Achr3P08700_001	Banana	cytosol	80.56	74.49
KRH20763	Soybean	nucleus	79.94	73.07
TraesCS3A01G158000.1	Wheat	cytosol, nucleus, plasma membrane	65.83	67.31
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	66.46	62.17
TraesCS6A01G086800.1	Wheat	nucleus	60.19	61.74
TraesCS1A01G136400.2	Wheat	cytoskeleton, nucleus, peroxisome	66.77	61.38
TraesCS1A01G371400.1	Wheat	cytosol	31.66	50.5
TraesCS3A01G101600.1	Wheat	nucleus	13.17	23.73
TraesCS3A01G030800.1	Wheat	cytosol	18.81	21.82
TraesCS3A01G025200.1	Wheat	cytosol, nucleus, plastid	18.5	21.53
TraesCS3A01G062700.1	Wheat	nucleus	18.5	21.45
TraesCS3A01G030600.1	Wheat	nucleus	18.81	21.28
TraesCS3A01G027500.1	Wheat	plastid	18.18	21.01
TraesCS3A01G027900.1	Wheat	cytosol	17.55	20.59
TraesCS1A01G060800.1	Wheat	nucleus	19.75	20.52
TraesCS3A01G031100.1	Wheat	cytosol	17.24	20.45
TraesCS4A01G395500.1	Wheat	cytosol	17.24	19.71
TraesCS5A01G228300.1	Wheat	cytosol	19.12	19.37
TraesCS3A01G048300.1	Wheat	nucleus	16.61	19.34
TraesCS3A01G101400.1	Wheat	cytosol	12.54	19.14
TraesCS3A01G032200.1	Wheat	nucleus	20.38	19.12
TraesCS3A01G031200.1	Wheat	cytosol	15.99	19.03
TraesCS3A01G062800.1	Wheat	nucleus	16.93	18.62
TraesCS3A01G030100.1	Wheat	nucleus	16.93	18.18
TraesCS3A01G031300.1	Wheat	cytosol	15.67	17.79
TraesCS4A01G395600.1	Wheat	cytosol	14.42	17.76
TraesCS2A01G446400.1	Wheat	cytosol, nucleus, plastid	14.42	17.1
TraesCS5A01G531400.2	Wheat	nucleus	17.55	16.92
TraesCS3A01G032100.1	Wheat	nucleus	20.06	14.04
TraesCS1A01G070000.1	Wheat	plastid	10.66	13.99
TraesCS4A01G369000.1	Wheat	cytosol	8.15	13.98
TraesCS2A01G586400.1	Wheat	nucleus	15.99	13.97
TraesCS2A01G589200.1	Wheat	nucleus, plastid	16.3	13.94

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF37	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS2A01G129000	EnsemblPlants:TraesCS2A01G129000.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	TIGR:cd03829	TIGR:cd16571	SEG:seg	:	:

Description

No Description!

Coordinates

chr2A:-:77263376..77266187

Molecular Weight (calculated)

35853.2 Da

IEP (calculated)

7.057

GRAVY (calculated)

-0.179

Length

319 amino acids

Sequence
(BLAST)

001: MQTAAAAAVS DSVSIGLVMA SAAYLDDIDA EVIDPPKIEM LDVTELVGDL IEHSPKPNVI VSSNVRELLE CPVCLVAMYP PIHQCSNGHT ICSGCKPRVH
101: NRCPTCRSEL GNIRCLALEK VAASLEVPCK FQNFGCVGIY PYYCKLKHES QCQYRPYTCP YAGSECTVTG DIPYLVNHLK DDHKVDMHSG STFNHRYVKS
201: NPHEVENATW MLTVFSCFGQ YFCLHFEAFQ LGMAPVYIAF LRFMGDDAEA KNYTYSLEVG GINRKMTWQG IPRSIRDSHR KVRDSYDGLI IQRNMALCFS
301: GGDRKELKLR VTGRIWKEQ

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.