CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13409	Soybean	cytosol	86.25	99.01
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	79.37	90.82
PGSC0003DMT400054414	Potato	cytosol	76.22	87.21
Os03t0356414-01	Rice	cytosol	74.5	86.38
EER97677	Sorghum	cytosol	74.5	86.09
Os07t0659800-01	Rice	cytosol	74.5	86.09
Zm00001d029203_P002	Maize	cytosol	74.21	85.76
EER92255	Sorghum	nucleus	74.21	85.76
Zm00001d022401_P002	Maize	cytosol	73.93	85.43
TraesCS4D01G164700.1	Wheat	nucleus	72.78	84.39
TraesCS4A01G148400.2	Wheat	nucleus	72.78	84.39
TraesCS2D01G131700.1	Wheat	cytosol	72.49	84.05
TraesCS2A01G129000.1	Wheat	plasma membrane	73.07	79.94
Solyc02g069880.2.1	Tomato	cytosol	44.41	76.73
GSMUA_Achr3P08700_001	Banana	cytosol	73.64	74.49
TraesCS2B01G151100.1	Wheat	plasma membrane	74.5	74.29
KRG97189	Soybean	nucleus	61.89	68.79
KRH64440	Soybean	cytosol	63.04	68.11
KRH53502	Soybean	cytosol	63.32	67.58
HORVU2Hr1G022590.1	Barley	nucleus	73.35	67.55
KRH68916	Soybean	nucleus	61.89	65.85
KRH67087	Soybean	nucleus	60.74	62.72
KRG95412	Soybean	nucleus	60.46	61.7
KRH42263	Soybean	nucleus	18.05	19.69
KRH58384	Soybean	nucleus	18.05	19.69

Protein Annotations

EntrezGene:100781022	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A0R0H122
EMBL:ACUP02008302	EnsemblPlantsGene:GLYMA_13G198800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlants:KRH20763	ProteinID:KRH20763	ProteinID:KRH20763.1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0006ED6BB3	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:31252140..31257733

Molecular Weight (calculated)

39399.2 Da

IEP (calculated)

8.022

GRAVY (calculated)

-0.449

Length

349 amino acids

Sequence
(BLAST)

001: MRCEDERVTA TIISLEIQTK TQGKKKKKKE KASEGIGQPV VAFTSMASSN LFFDDIRSKV DVDPPQNEES TDVGELLNDP AQTALKPNGT VSSSVRELLE
101: CPVCLNAMYP PIHQCSNGHT ICSGCKPRVH NRCPTCRHEL GNIRCLALEK VAASLELPCK YQGFGCIGIY PYYSKLKHES QCAHRPYNCP YAGSECSIMG
201: DIPYLVAHLK DDHKVDMHNG STFNHRYVKS NPQEVENATW MLTVFSCFGQ YFCLHFEAFQ LGMAPVYIAF LRFMGDDDEA KNYSYSLEVG GNGRKMIWQG
301: VPRSIRDSHR KVRDSFDGLI IQRNMALFFS GGDRKELKLR VTGRIWKEQ

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.