Factsheet for Zm00001d022401_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97677	Sorghum	cytosol	98.68	98.68
Os07t0659800-01	Rice	cytosol	95.03	95.03
Zm00001d029203_P002	Maize	cytosol	91.06	91.06
TraesCS2D01G131700.1	Wheat	cytosol	90.73	91.03
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	88.08	87.21
TraesCS2A01G129000.1	Wheat	plasma membrane	90.73	85.89
KRH13409	Soybean	cytosol	85.43	84.87
PGSC0003DMT400054414	Potato	cytosol	84.11	83.28
TraesCS2B01G151100.1	Wheat	plasma membrane	90.73	78.29
GSMUA_Achr3P08700_001	Banana	cytosol	87.75	76.81
KRH20763	Soybean	nucleus	85.43	73.93
Solyc02g069880.2.1	Tomato	cytosol	49.01	73.27
HORVU2Hr1G022590.1	Barley	nucleus	90.73	72.3
Zm00001d015123_P001	Maize	cytosol	65.56	63.26
Zm00001d015952_P001	Maize	nucleus	71.19	63.05
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	71.52	62.61
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	71.19	61.6
Zm00001d053289_P001	Maize	cytosol	70.53	61.38
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	18.21	24.55
Zm00001d041049_P001	Maize	nucleus	18.21	16.82

Protein Annotations

EntrezGene:100170244	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:B6SRI2
EMBL:BT055393	EMBL:BT064224	EMBL:EU955347	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	ProteinID:ONM60408.1	ProteinID:ONM60409.1	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF37	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI000182B316	EnsemblPlantsGene:Zm00001d022401	EnsemblPlants:Zm00001d022401_P002	EnsemblPlants:Zm00001d022401_T002
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:

Description

TRAF-like superfamily protein

Coordinates

chr7:+:176820395..176824124

Molecular Weight (calculated)

34340.0 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.422

Length

302 amino acids

Sequence
(BLAST)

001: MASVTYIDDS HAEVIDPPKN EEMLDATELV GDHIQNSPKP NVASYGNVRE LLECPVCLSA MYPPIHQCSN GHTLCSGCKP RVHNRCPTCR HELGNIRCLA
101: LEKVAASLEL PCKYQNFGCL GIYPYYCKLK HESQCQYRPY TCPYAGSECT VAGDIPYLVN HLKDDHKVDM HNGSTFNHRY VKSNPHEVEN ATWMLTVFSC
201: FGQYFCLHFE AFQLGMAPVY IAFLRFMGDD AEAKNYSYSL EVGGSGRKMT WQGVPRSIRD SHRKVRDSYD GLIIQRNMAL FFSGGDRKEL KLRVTGRIWK
301: EQ

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.