Factsheet for Zm00001d053289_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06707	Sorghum	nucleus	96.83	97.67
Zm00001d015952_P001	Maize	nucleus	93.66	95.31
HORVU7Hr1G082100.1	Barley	nucleus	76.08	91.99
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	85.3	86.8
TraesCS7B01G244800.1	Wheat	cytosol, nucleus, peroxisome	85.3	86.8
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	85.3	86.8
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	86.74	86.25
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	78.39	78.84
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	78.39	77.94
Zm00001d022401_P002	Maize	cytosol	61.38	70.53
Zm00001d029203_P002	Maize	cytosol	61.38	70.53
Zm00001d015123_P001	Maize	cytosol	57.93	64.22
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	15.85	24.55
Zm00001d041049_P001	Maize	nucleus	15.85	16.82

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:AQK59192.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K7U9R6	PFAM:PF03145	PFscan:PS50089
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850
InterPro:TRAF-like	UniParc:UPI00022216C2	EnsemblPlantsGene:Zm00001d053289	EnsemblPlants:Zm00001d053289_P001	EnsemblPlants:Zm00001d053289_T001	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

Putative seven in absentia domain family protein

Coordinates

chr4:-:224316801..224320722

Molecular Weight (calculated)

38420.5 Da

IEP (calculated)

6.553

GRAVY (calculated)

-0.252

Length

347 amino acids

Sequence
(BLAST)

001: MELDSIECVS YSDGMEDDDD TAAVTSSQLP RPFLKSSSTA GAAAAAAAAV NVVVVSDRAG AAGTVAGAGP LVISPATGVH ELLECPVCTN SMYPPIHQCQ
101: NGHTLCSTCK TRVHNRCPTC RQELGDIRCL ALEKVAESLE LPCRYYSLGC PEVFPYYSKL SHESQCSFRP YNCPYAGSEC SVVGDIPFLV AHLRDDHKVD
201: MHSGCTFNHR YVKSNPREVE NATWMLTVFH CFGQYFCLHF EAFQLGLAPV YMAFLRFMGD ENDSRNYSYS LEVGANGRKM IWEGTPRSIR DSHRKVRDSH
301: DGLIIQRNMA LFFSGGDRKE LKLRVTGRIW KEQQNPDSGA CIPNLFS

Best Arabidopsis Sequence Match ( AT4G27880.1 )
(BLAST)

001: METDSMECVS STGNEIHQNG NGHQSYQFSS TKTHGGAAAA AVVTNIVGPT ATAPATSVYE LLECPVCTYS MYPPIHQCHN GHTLCSTCKV RVHNRCPTCR
101: QELGDIRCLA LEKVAESLEL PCKFYNLGCP EIFPYYSKLK HESLCNFRPY SCPYAGSECG IVGDIPFLVA HLRDDHKVDM HAGSTFNHRY VKSNPREVEN
201: ATWMLTVFHC FGQYFCLHFE AFQLGMGPVY MAFLRFMGDE EDARSYSYSL EVGGSGRKLT WEGTPRSIRD SHRKVRDSND GLIIQRNMAL FFSGGDRKEL
301: KLRVTGKIWK EQHSPDSGLS IPNLSSS

Arabidopsis Description

SINAT4E3 ubiquitin-protein ligase SINAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.