Factsheet for Zm00001d040046_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86439	Sorghum	cytosol, mitochondrion, plastid	62.05	52.26
TraesCS4A01G369000.1	Wheat	cytosol	35.27	42.47
HORVU3Hr1G018640.1	Barley	cytosol	38.39	41.35
TraesCS5D01G504400.1	Wheat	cytosol	37.05	41.29
TraesCS3A01G101400.1	Wheat	cytosol	38.39	41.15
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	50.0	37.09
TraesCS3A01G101600.1	Wheat	nucleus	29.02	36.72
HORVU3Hr1G018420.2	Barley	plastid	41.07	29.02
Zm00001d022401_P002	Maize	cytosol	24.55	18.21
Zm00001d029203_P002	Maize	cytosol	24.55	18.21
Zm00001d015123_P001	Maize	cytosol	24.55	17.57
Zm00001d041049_P001	Maize	nucleus	25.0	17.13
Zm00001d015952_P001	Maize	nucleus	24.55	16.13
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	24.55	15.94
Zm00001d053289_P001	Maize	cytosol	24.55	15.85
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	24.55	15.76

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1D6MME6	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	ProteinID:ONM30367.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF30	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI00022139E2
EnsemblPlantsGene:Zm00001d040046	EnsemblPlants:Zm00001d040046_P001	EnsemblPlants:Zm00001d040046_T001	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg

Description

E3 ubiquitin-protein ligase SINA-like 10

Coordinates

chr3:-:24643431..24644537

Molecular Weight (calculated)

24607.8 Da

IEP (calculated)

8.368

GRAVY (calculated)

-0.047

Length

224 amino acids

Sequence
(BLAST)

001: MCKNGHSVCA KCCIRTNGKC WTCSERIGDI RCRPLEKLLA AATTSCMFKS NGCYDVISYL EKVTHEETCQ RAPYKCPVHG CAYSGLRLGY HVAQDHGHDD
101: DGLASVVFIY GKAVATVRKD EPFRVLLQRN TERVFLLLNG HDLLQGRSLS LLCLGPRFQD GVEVELKYKM EVSGGAPGAL TLSASGTIPF ARRLDGFQAK
201: GFLFVPDAYW GSAGSISVTV RIYV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.