Factsheet for Zm00001d015123_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84285	Sorghum	cytosol	96.17	96.78
Os02t0128800-01	Rice	cytosol	87.86	89.29
TraesCS6B01G114800.1	Wheat	nucleus	88.18	88.75
TraesCSU01G019700.1	Wheat	nucleus	88.18	88.75
HORVU6Hr1G016120.2	Barley	nucleus	87.86	88.42
TraesCS6A01G086800.1	Wheat	nucleus	87.86	88.42
GSMUA_Achr1P10820_001	Banana	nucleus, peroxisome, plasma membrane	64.22	83.06
GSMUA_Achr11P...	Banana	nucleus	70.93	74.5
Zm00001d029203_P002	Maize	cytosol	63.58	65.89
Zm00001d022401_P002	Maize	cytosol	63.26	65.56
Zm00001d015952_P001	Maize	nucleus	65.18	59.82
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	65.18	59.13
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	65.5	58.74
Zm00001d053289_P001	Maize	cytosol	64.22	57.93
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	17.57	24.55
Zm00001d041049_P001	Maize	nucleus	19.17	18.35

Protein Annotations

EntrezGene:100170245	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:AQK68122.1
UniProt:B3F0L4	EMBL:EF434387	EMBL:EU959580	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS50089	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like
UniParc:UPI000014DFC8	EnsemblPlantsGene:Zm00001d015123	EnsemblPlants:Zm00001d015123_P001	EnsemblPlants:Zm00001d015123_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

SINA2%3B Ubiquitin ligase SINAT2

Coordinates

chr5:-:76475887..76478923

Molecular Weight (calculated)

34797.7 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.236

Length

313 amino acids

Sequence
(BLAST)

001: MAPGSSIVTV VPESDCGDDD GLSESLGGIM LDVDSASKPW STSASLANVA LSSLCGLNDL LECPVCTNSM RPPILQCPNG HTICSSCKHR VENHCPTCRQ
101: ELGNIRCLAL EKVAEQLQLP CKYQSTGCTE IHPYKSKLKH EELCRFRPYS CPYAGSECLI AGDVPFLVSH LINDHKVDLH EGCTFNHRYV KPNPYEVENA
201: TWMLTVFKCF GQHFCLHFEA FVLGMAPVYM AFLRFMGEES EAQGFGYSLE VGGGGRKLTW QGTPRSVRDS HRKVRDSFDG LIIHRNMALF FSGGGRQELK
301: LRVTGRIWRE QGQ

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.