Factsheet for Zm00001d010403_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, nucleus, peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19270	Sorghum	cytosol, nucleus, peroxisome	96.56	95.47
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	94.27	95.36
Os05t0238200-01	Rice	cytoskeleton, nucleus, peroxisome	92.26	89.2
Zm00001d015952_P001	Maize	nucleus	77.65	79.47
Zm00001d053289_P001	Maize	cytosol	77.94	78.39
Zm00001d029203_P002	Maize	cytosol	62.75	72.52
Zm00001d022401_P002	Maize	cytosol	61.6	71.19
Zm00001d015123_P001	Maize	cytosol	58.74	65.5
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	15.76	24.55
Zm00001d041049_P001	Maize	nucleus	16.33	17.43

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	ProteinID:AQK93976.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016874	GO:GO:0019538
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	UniProt:K7UW34
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0002219991	EnsemblPlantsGene:Zm00001d010403	EnsemblPlants:Zm00001d010403_P001
EnsemblPlants:Zm00001d010403_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

E3 ubiquitin-protein ligase SINAT4

Coordinates

chr8:-:113059177..113063728

Molecular Weight (calculated)

38264.6 Da

IEP (calculated)

7.104

GRAVY (calculated)

-0.314

Length

349 amino acids

Sequence
(BLAST)

001: MDMDRDSVEC LSLPDAAMDV DNVDGHPHHG HLGLPLHPAH LPSSGAGRAF PKVNAGGGGA GPAVAGAAGA AGAGGGPPAT SVHELLECPV CTNSMFPPIH
101: QCQNGHTLCS TCKARVHNRC PTCRQELGDI RCLALEKVAE SLELPCKYCS LGCPEIFPYY SKIKHEAQCS FRPYNCPYAG SECAVAGDIP FLVAHLRDDH
201: KVDMHSGCTF NHRYVKSNPR EVENATWMLT VFHCFGQYFC LHFEAFQLGM APVYMAFLRF MGDENEARNY TYSLEVGGNG RKMVWEGTPR SIRDSHRKVR
301: DSHDGLIIQR NMALFFSGGD RKELKLRVTG RIWKEQTNPD GACIPNLCS

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.