Factsheet for Zm00001d029203_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92255	Sorghum	nucleus	97.68	97.68
Os03t0356414-01	Rice	cytosol	93.38	93.69
Zm00001d022401_P002	Maize	cytosol	91.06	91.06
TraesCS4A01G148400.2	Wheat	nucleus	90.73	91.03
TraesCS4D01G164700.1	Wheat	nucleus	90.73	91.03
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	88.41	87.54
KRH13409	Soybean	cytosol	85.1	84.54
PGSC0003DMT400054414	Potato	cytosol	84.11	83.28
GSMUA_Achr3P08700_001	Banana	cytosol	86.42	75.65
Solyc02g069880.2.1	Tomato	cytosol	49.67	74.26
KRH20763	Soybean	nucleus	85.76	74.21
Zm00001d015123_P001	Maize	cytosol	65.89	63.58
Zm00001d037790_P001	Maize	cytoskeleton, nucleus, peroxisome	72.19	63.19
Zm00001d015952_P001	Maize	nucleus	70.86	62.76
Zm00001d010403_P001	Maize	cytoskeleton, nucleus, peroxisome	72.52	62.75
Zm00001d053289_P001	Maize	cytosol	70.53	61.38
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	18.21	24.55
Zm00001d041049_P001	Maize	nucleus	17.88	16.51

Protein Annotations

EntrezGene:100170243	MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:B3F0L2
EMBL:BT035771	EMBL:BT088087	EMBL:EF434385	EMBL:EU953077	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006511	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009628	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	GO:GO:0080148
InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	ProteinID:ONL98171.1	ProteinID:ONL98173.1
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI0001756049	EnsemblPlantsGene:Zm00001d029203	EnsemblPlants:Zm00001d029203_P002
EnsemblPlants:Zm00001d029203_T002	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

TRAF-like superfamily protein

Coordinates

chr1:-:62216795..62220497

Molecular Weight (calculated)

34223.0 Da

IEP (calculated)

7.569

GRAVY (calculated)

-0.366

Length

302 amino acids

Sequence
(BLAST)

001: MMATTAYIDD SCSEVIDPPK TEVLDVAELP GDHTQNPPKP NVVVSSSVRE LLECPVCLSA MYPPIHQCSN GHTLCSGCKP RVHNRCPTCR HELGNIRCLA
101: LEKVAASLEL PCKYQCFGCP GIYPYYSKLK HESQCQYRPY SCPYAGSECT VAGDIPYLVN HLKDDHKVDM HNGCTFNHRY VKPNPHEVEN ATWMLTVFSC
201: FGQYFCLHFE AFQLGMSPVY IAFLRFMGDD AEAKNYSYSL EVGGTGRKMV WQGVPRSIRD SHRKVRDSYD GLIIQRNMAL FFSGGDRKEL KLRVTGRIWK
301: EQ

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.