Factsheet for TraesCS4D01G164700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G148400.2	Wheat	nucleus	99.34	99.34
Os03t0356414-01	Rice	cytosol	91.69	91.69
Zm00001d029203_P002	Maize	cytosol	91.03	90.73
EER92255	Sorghum	nucleus	90.7	90.4
TraesCS2D01G131700.1	Wheat	cytosol	87.71	87.71
VIT_13s0139g00150.t01	Wine grape	cytosol, nucleus, plastid	88.37	87.21
KRH13409	Soybean	cytosol	84.39	83.55
PGSC0003DMT400054414	Potato	cytosol	83.39	82.3
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	65.12	77.78
GSMUA_Achr3P08700_001	Banana	cytosol	86.05	75.07
Solyc02g069880.2.1	Tomato	cytosol	49.5	73.76
KRH20763	Soybean	nucleus	84.39	72.78
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	71.1	65.85
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	72.09	63.64
TraesCS3D01G028800.1	Wheat	nucleus	16.94	23.83
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	19.93	21.74
TraesCS3D01G029000.1	Wheat	cytosol	19.93	21.28
TraesCS3D01G504900.1	Wheat	nucleus	19.27	21.17
TraesCS3D01G018100.1	Wheat	cytosol	18.27	20.52
TraesCS3D01G031300.1	Wheat	nucleus	17.94	19.71
TraesCS3D01G030300.1	Wheat	nucleus	19.27	19.4
TraesCS3D01G029300.1	Wheat	nucleus	21.26	18.82
TraesCS3D01G029600.1	Wheat	nucleus	20.6	18.51
TraesCS3D01G018300.1	Wheat	mitochondrion	19.6	18.27
TraesCS3D01G015600.1	Wheat	cytosol	17.94	18.18
TraesCS1D01G061700.1	Wheat	nucleus	20.93	17.9
TraesCS4D01G356400.2	Wheat	nucleus	19.6	17.56
TraesCS5D01G504400.1	Wheat	cytosol	11.63	17.41
TraesCS2D01G600200.1	Wheat	nucleus	17.61	14.52
TraesCS3D01G029400.1	Wheat	nucleus	21.93	14.38
TraesCS2D01G564800.1	Wheat	nucleus, plastid	17.61	14.13
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	12.96	13.68
TraesCS1D01G102900.1	Wheat	nucleus	17.28	13.61

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006511	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009628	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	GO:GO:0080148	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
PFAM:PF03145	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF37	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS4D01G164700	EnsemblPlants:TraesCS4D01G164700.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	TIGR:cd16571	:	:	:

Description

No Description!

Coordinates

chr4D:-:266783876..266785782

Molecular Weight (calculated)

33872.5 Da

IEP (calculated)

7.616

GRAVY (calculated)

-0.332

Length

301 amino acids

Sequence
(BLAST)

001: MASAAYTDDS GSEVIDPPKS EVLDVAELVG DHTQLTQKSN VVASSSVREL LECPVCLSAM YPPIHQCSNG HTLCSGCKPR VHNRCPTCRH ELGNIRCLAL
101: EKVAASLELP CKYQNFGCLG IYPYYCKLKH ESQCHYRPYS CPYAGSECTV GGDIPYLVNH LKDDHKVDMH SGSTFNHRYV KSNPHEVENA TWMLTVFSCF
201: GQYFCLHFEA FQLGMAPVYI AFLRFMGDDA EAKKYSYSLE VGGGGRKMIF QGVPRSIRDG HRKVRDSYDG LIIQRNMALF FSGGERKELK LRVTGRIWKE
301: E

Best Arabidopsis Sequence Match ( AT2G41980.1 )
(BLAST)

001: MAPGGSALKE ALESNSTGVD YEVKMAKVEA NSKPTKSGSG SIGKFHSSNG VYELLECPVC TNLMYPPIHQ CPNGHTLCSS CKLRVQNTCP TCRYELGNIR
101: CLALEKVAES LEVPCRYQNL GCQDIFPYYS KLKHEQHCRF RSYSCPYAGS ECSVTGDIPT LVDHLKDDHK VDMHDGCTFN HRYVKSNPHE VENATWMLTV
201: FNCFGRQFCL HFEAFQLGMA PVYMAFLRFM GDENEAKKFS YSLEVGAHSR KLTWQGIPRS IRDSHRKVRD SQDGLIIPRN LALYFSGSDK EELKLRVTGR
301: IWKEE

Arabidopsis Description

SINAT1E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VZ75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.