Factsheet for TraesCS5D01G504400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G369000.1	Wheat	cytosol	79.6	86.02
HORVU3Hr1G018640.1	Barley	cytosol	49.75	48.08
Zm00001d040046_P001	Maize	cytosol, mitochondrion, nucleus	41.29	37.05
Os01t0123700-00	Rice	cytosol, mitochondrion, nucleus	49.25	32.78
OQU86439	Sorghum	cytosol, mitochondrion, plastid	38.81	29.32
TraesCS3D01G018100.1	Wheat	cytosol	31.84	23.88
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	31.84	23.19
TraesCS3D01G018300.1	Wheat	mitochondrion	34.33	21.36
TraesCS3D01G028800.1	Wheat	nucleus	16.92	15.89
TraesCS3D01G029000.1	Wheat	cytosol	20.9	14.89
TraesCS3D01G015600.1	Wheat	cytosol	21.89	14.81
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	17.91	14.29
TraesCS3D01G504900.1	Wheat	nucleus	18.91	13.87
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	18.91	13.33
TraesCS3D01G030300.1	Wheat	nucleus	18.41	12.37
TraesCS3D01G031300.1	Wheat	nucleus	16.42	12.04
TraesCS3D01G029300.1	Wheat	nucleus	19.9	11.76
TraesCS1D01G061700.1	Wheat	nucleus	20.4	11.65
TraesCS4D01G164700.1	Wheat	nucleus	17.41	11.63
TraesCS4D01G356400.2	Wheat	nucleus	19.4	11.61
TraesCS3D01G029600.1	Wheat	nucleus	18.41	11.04
TraesCS2D01G131700.1	Wheat	cytosol	16.42	10.96
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	17.41	10.77
TraesCS7D01G340900.1	Wheat	cytosol, nucleus, peroxisome	17.91	10.56
TraesCS1D01G102900.1	Wheat	nucleus	18.41	9.69
TraesCS2D01G564800.1	Wheat	nucleus, plastid	17.91	9.6
TraesCS2D01G600200.1	Wheat	nucleus	16.42	9.04
TraesCS3D01G029400.1	Wheat	nucleus	19.9	8.71

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF30	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS5D01G504400	EnsemblPlants:TraesCS5D01G504400.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:-:530841120..530841725

Molecular Weight (calculated)

22014.2 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.234

Length

201 amino acids

Sequence
(BLAST)

001: MEKVLAGMAR PCKFSRHGCE ETVKFTELRS HEEEACPYAP YSCPFDGCAY RGALLYDHVR DEHALAPAPN CDTGGLLRGA SVTLRRDEPA VHALLHGDRV
101: SVILLLNGGD VLAGRSLSLV RICPHPKPGQ EDEEVEYRMV VTRDEPEPGT GSPSLAASGK VQYVRRLEGY RPRHFLFVPD AFWGSSGSVV VTVTTTVTVH
201: L

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.