Factsheet for TraesCS7D01G340900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G332700.1	Wheat	cytosol, nucleus, peroxisome	100.0	100.0
TraesCS7B01G244800.1	Wheat	cytosol, nucleus, peroxisome	99.71	99.71
HORVU7Hr1G082100.1	Barley	nucleus	82.4	97.91
TraesCS1D01G134000.1	Wheat	mitochondrion, nucleus, peroxisome, plasma membrane	68.33	92.46
Os02t0293400-01	Rice	cytosol, nucleus, peroxisome	89.44	87.39
EES06707	Sorghum	nucleus	87.98	87.21
Zm00001d015952_P001	Maize	nucleus	86.51	86.51
Zm00001d053289_P001	Maize	cytosol	86.8	85.3
TraesCS3D01G165600.1	Wheat	cytoskeleton, nucleus, plasma membrane	78.01	81.85
TraesCS4D01G164700.1	Wheat	nucleus	63.64	72.09
TraesCS2D01G131700.1	Wheat	cytosol	62.17	70.43
TraesCS3D01G028800.1	Wheat	nucleus	14.96	23.83
TraesCS3D01G504900.1	Wheat	nucleus	18.48	22.99
TraesCS3D01G029000.1	Wheat	cytosol	18.48	22.34
TraesCS3D01G020800.1	Wheat	cytosol, nucleus, plastid	17.89	22.1
TraesCS3D01G018100.1	Wheat	cytosol	17.3	22.01
TraesCS3D01G030300.1	Wheat	nucleus	18.18	20.74
TraesCS3D01G031300.1	Wheat	nucleus	15.84	19.71
TraesCS3D01G015600.1	Wheat	cytosol	17.01	19.53
TraesCS3D01G018300.1	Wheat	mitochondrion	18.18	19.2
TraesCS3D01G029300.1	Wheat	nucleus	18.48	18.53
TraesCS3D01G029600.1	Wheat	nucleus	17.6	17.91
TraesCS5D01G504400.1	Wheat	cytosol	10.56	17.91
TraesCS4D01G356400.2	Wheat	nucleus	17.6	17.86
TraesCS1D01G061700.1	Wheat	nucleus	18.18	17.61
TraesCS2D01G564800.1	Wheat	nucleus, plastid	16.72	15.2
TraesCS2D01G600200.1	Wheat	nucleus	15.25	14.25
TraesCS3D01G029400.1	Wheat	nucleus	18.77	13.94
TraesCS1D01G102900.1	Wheat	nucleus	15.54	13.87
TraesCS3D01G029700.1	Wheat	cytosol, mitochondrion, nucleus	11.44	13.68

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145
PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599
SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7D01G340900	EnsemblPlants:TraesCS7D01G340900.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	TIGR:cd03829	TIGR:cd16571	SEG:seg	:	:

Description

No Description!

Coordinates

chr7D:-:436736713..436740420

Molecular Weight (calculated)

37669.0 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.243

Length

341 amino acids

Sequence
(BLAST)

001: MDMIDSIECV SSSDGMEDDD AMSSNLPRPF LKASAAAIAA ASIGVVPGGV GGASGAGAAG GIAGPLIPPA TSVHELLECP VCTNSMYPPI HQCQNGHTLC
101: STCKARVHNR CPTCRQELGD IRCLALEKVA ESLELPCKYY SLGCPEIFPY YSKLKHESQC NFRPYSCPYA GSECSVVGDI PFLVSHLRDD HKVDMHSGCT
201: FNHRYVKSNP REVENATWML TVFHCFGQYF CLHFEAFQLG MAPVYMAFLR FMGDENDARN YSYSLEVGAN GRKMIWEGTP RSIRDSHRKV RDSHDGLIIQ
301: RNMALFFSGG ERKELKLRVT GRIWKEQQNP DSGACIPNLF S

Best Arabidopsis Sequence Match ( AT3G61790.1 )
(BLAST)

001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS

Arabidopsis Description

SINAT3E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178V9V8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.