Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G004880.2 | Barley | nucleus | 88.06 | 87.02 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 35.22 | 55.14 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 44.78 | 53.19 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 52.24 | 49.72 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 44.78 | 44.12 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 36.12 | 42.46 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 55.52 | 40.52 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 30.15 | 36.86 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 28.36 | 34.67 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 29.55 | 33.11 |
| CDY11709 | Canola | nucleus | 14.93 | 30.3 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 23.58 | 26.6 |
| CDY36209 | Canola | plastid | 16.72 | 26.54 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.03 | 25.54 |
| CDY12498 | Canola | nucleus | 20.6 | 25.37 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.72 | 25.34 |
| Bra012354.1-P | Field mustard | cytosol | 19.7 | 24.26 |
| CDY25763 | Canola | nucleus | 19.7 | 24.26 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 19.4 | 24.16 |
| Bra000425.1-P | Field mustard | nucleus | 20.3 | 24.03 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.84 | 24.02 |
| Bra025434.1-P | Field mustard | nucleus | 20.3 | 23.94 |
| CDY52473 | Canola | nucleus | 20.0 | 23.59 |
| AT1G66630.1 | Thale cress | cytosol | 21.19 | 23.43 |
| CDX99687 | Canola | nucleus | 19.7 | 23.32 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 23.28 | 23.21 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 20.3 | 23.13 |
| AT5G37890.1 | Thale cress | nucleus | 19.7 | 23.08 |
| CDY01699 | Canola | nucleus, plastid | 19.4 | 23.05 |
| Bra018266.1-P | Field mustard | plastid | 19.7 | 22.84 |
| CDY10787 | Canola | plastid | 19.7 | 22.84 |
| TraesCS3D01G018100.1 | Wheat | cytosol | 18.21 | 22.76 |
| AT1G66620.1 | Thale cress | nucleus | 21.19 | 22.68 |
| Bra004174.1-P | Field mustard | nucleus | 23.88 | 22.66 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 23.58 | 22.64 |
| CDY47873 | Canola | nucleus | 21.79 | 22.53 |
| Bra028395.1-P | Field mustard | nucleus | 21.79 | 22.53 |
| TraesCS3D01G020800.1 | Wheat | cytosol, nucleus, plastid | 18.51 | 22.46 |
| AT5G37870.1 | Thale cress | nucleus | 18.81 | 22.42 |
| KRH42263 | Soybean | nucleus | 21.19 | 22.19 |
| CDY27008 | Canola | nucleus | 21.49 | 21.88 |
| CDY70665 | Canola | nucleus | 20.9 | 21.6 |
| TraesCS1D01G134000.1 | Wheat | mitochondrion, nucleus, peroxisome, plasma membrane | 16.12 | 21.43 |
| Bra022858.1-P | Field mustard | nucleus | 19.4 | 21.38 |
| KRH58384 | Soybean | nucleus | 20.3 | 21.25 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 18.81 | 21.21 |
| Bra004402.1-P | Field mustard | nucleus | 20.0 | 21.14 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 12.54 | 21.0 |
| AT5G62800.1 | Thale cress | nucleus | 21.79 | 20.98 |
| AT1G66650.1 | Thale cress | nucleus | 20.6 | 20.97 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 23.88 | 20.94 |
| TraesCS2D01G131700.1 | Wheat | cytosol | 18.81 | 20.93 |
| Bra019710.1-P | Field mustard | nucleus | 21.19 | 20.76 |
| TraesCS4D01G164700.1 | Wheat | nucleus | 18.51 | 20.6 |
| CDY01695 | Canola | nucleus | 18.81 | 20.39 |
| AT1G66610.1 | Thale cress | nucleus | 21.79 | 19.95 |
| AT5G37910.1 | Thale cress | nucleus | 16.42 | 19.93 |
| AT5G37900.1 | Thale cress | nucleus | 14.33 | 19.92 |
| AT5G37930.1 | Thale cress | nucleus | 20.6 | 19.77 |
| Solyc03g034460.2.1 | Tomato | nucleus | 21.19 | 19.72 |
| Solyc03g042550.1.1 | Tomato | nucleus | 20.9 | 19.44 |
| PGSC0003DMT400043050 | Potato | nucleus | 21.79 | 19.16 |
| TraesCS3D01G165600.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 18.51 | 19.08 |
| AT1G66660.2 | Thale cress | nucleus | 19.4 | 18.68 |
| TraesCS5D01G504400.1 | Wheat | cytosol | 11.04 | 18.41 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.19 | 18.11 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 17.31 | 17.96 |
| CDX96138 | Canola | nucleus | 18.21 | 17.94 |
| Bra004176.1-P | Field mustard | nucleus | 17.91 | 17.8 |
| TraesCS7D01G340900.1 | Wheat | cytosol, nucleus, peroxisome | 17.91 | 17.6 |
| Solyc03g042520.1.1 | Tomato | nucleus | 16.12 | 17.42 |
| CDY36211 | Canola | nucleus | 18.21 | 16.9 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 17.61 | 15.73 |
| CDY01757 | Canola | cytosol | 2.39 | 15.09 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 16.42 | 15.07 |
| CDY01758 | Canola | cytosol | 13.73 | 10.53 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3D01G029600 | EnsemblPlants:TraesCS3D01G029600.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:+:10675721..10677063
Molecular Weight (calculated)
37432.3 Da
IEP (calculated)
6.421
GRAVY (calculated)
-0.485
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGTSSNKRQ LEAQLEGDSN AKRHNVTMRL ETLDCSVCSE PLRPPIFQSS LGHFICLSCR SEILDKKCHL CSAVTSFERC FGMEHVIKSV TVACSNAKYG
101: CAEQIIYYQK EEHEKMCPNA PCFCPESGCG FAGSTMALLG HMTGKHKCPL STCDDPSMVN VYLYLEPGLR VLHCHEDDQF FLFNMASESF GHAISVVCVQ
201: PRVTEPKFTC DLYYDSSTTD DSQNSCCKVR SSSLSDGLPT GYDLIVPKGK VSDEGNGIML RATIREKRNV FYDSDSDEVP RALGRRKRNG RNPDCSDPNH
301: ERPVPLAARL IPDYSESEDE RPLAARFSKI RGYER
101: CAEQIIYYQK EEHEKMCPNA PCFCPESGCG FAGSTMALLG HMTGKHKCPL STCDDPSMVN VYLYLEPGLR VLHCHEDDQF FLFNMASESF GHAISVVCVQ
201: PRVTEPKFTC DLYYDSSTTD DSQNSCCKVR SSSLSDGLPT GYDLIVPKGK VSDEGNGIML RATIREKRNV FYDSDSDEVP RALGRRKRNG RNPDCSDPNH
301: ERPVPLAARL IPDYSESEDE RPLAARFSKI RGYER
001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.