Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 61.51 | 69.52 |
| CDY01757 | Canola | cytosol | 11.84 | 67.92 |
| Bra004402.1-P | Field mustard | nucleus | 70.72 | 67.82 |
| AT1G66620.1 | Thale cress | nucleus | 60.53 | 58.79 |
| Bra004174.1-P | Field mustard | nucleus | 59.21 | 50.99 |
| Bra025434.1-P | Field mustard | nucleus | 45.72 | 48.94 |
| AT1G66610.1 | Thale cress | nucleus | 57.89 | 48.09 |
| Bra018266.1-P | Field mustard | plastid | 44.74 | 47.06 |
| Bra000425.1-P | Field mustard | nucleus | 41.45 | 44.52 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 12.83 | 42.86 |
| Bra012354.1-P | Field mustard | cytosol | 34.87 | 38.97 |
| Bra028395.1-P | Field mustard | nucleus | 39.14 | 36.73 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.7 | 31.22 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 21.38 | 30.37 |
| Bra019710.1-P | Field mustard | nucleus | 32.57 | 28.95 |
| KRH42263 | Soybean | nucleus | 30.26 | 28.75 |
| KRH58384 | Soybean | nucleus | 30.26 | 28.75 |
| Bra004176.1-P | Field mustard | nucleus | 31.25 | 28.19 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 18.42 | 28.0 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 22.7 | 27.38 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 24.34 | 27.01 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 23.36 | 26.69 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 24.34 | 26.24 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.79 | 26.09 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 23.68 | 25.9 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 24.01 | 25.89 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 23.36 | 25.82 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 23.36 | 25.82 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 23.03 | 25.55 |
| Solyc03g034460.2.1 | Tomato | nucleus | 29.93 | 25.28 |
| Solyc03g042550.1.1 | Tomato | nucleus | 29.93 | 25.28 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 22.7 | 25.18 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 23.36 | 25.18 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 24.67 | 25.08 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 23.03 | 24.91 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 23.03 | 24.82 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 23.03 | 24.65 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 21.38 | 24.53 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 22.04 | 24.45 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 22.04 | 24.45 |
| PGSC0003DMT400043050 | Potato | nucleus | 30.59 | 24.41 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 22.04 | 24.36 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 23.36 | 24.32 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 21.38 | 24.25 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 22.04 | 24.19 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 26.32 | 24.17 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 21.05 | 24.06 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 23.03 | 23.89 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 21.05 | 23.79 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 25.66 | 23.78 |
| Zm00001d041049_P001 | Maize | nucleus | 25.33 | 23.55 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 25.99 | 23.51 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 23.68 | 23.45 |
| OQU78944 | Sorghum | nucleus | 24.67 | 23.01 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 19.08 | 22.92 |
| KXG37941 | Sorghum | cytosol | 21.05 | 22.86 |
| Solyc03g034450.2.1 | Tomato | nucleus | 29.28 | 22.7 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 22.37 | 22.67 |
| KXG32009 | Sorghum | nucleus | 22.04 | 22.64 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 21.71 | 22.6 |
| Solyc03g042520.1.1 | Tomato | nucleus | 23.03 | 22.58 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 19.74 | 22.3 |
| KXG32014 | Sorghum | nucleus | 16.12 | 22.27 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 21.38 | 22.26 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 23.03 | 22.22 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 21.05 | 22.07 |
| EES00387 | Sorghum | nucleus | 23.03 | 21.94 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 17.43 | 21.46 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 19.74 | 21.43 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 25.0 | 21.23 |
| Bra000249.1-P | Field mustard | nucleus | 21.38 | 21.17 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 21.05 | 20.85 |
| Bra016898.1-P | Field mustard | cytosol | 20.72 | 20.66 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 23.03 | 20.65 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 20.07 | 20.54 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 20.07 | 20.33 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 20.07 | 20.27 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 22.04 | 20.18 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 23.36 | 20.17 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 21.38 | 19.88 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 19.41 | 19.87 |
| TraesCSU01G045900.1 | Wheat | cytosol | 19.41 | 19.73 |
| Bra010392.1-P | Field mustard | nucleus | 20.72 | 19.69 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 18.09 | 19.64 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 24.67 | 19.63 |
| Bra003315.1-P | Field mustard | cytosol, nucleus, plastid | 16.78 | 19.62 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 19.08 | 19.53 |
| Bra014589.1-P | Field mustard | nucleus | 18.75 | 19.52 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 21.71 | 19.41 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 21.71 | 19.41 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 21.71 | 19.41 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 21.38 | 19.4 |
| Bra026301.1-P | Field mustard | nucleus | 20.39 | 19.25 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.76 | 19.22 |
| Bra014421.1-P | Field mustard | cytosol | 20.07 | 19.06 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.5 | 19.0 |
| OQU77422 | Sorghum | cytosol | 17.76 | 18.88 |
| Bra003473.1-P | Field mustard | nucleus | 19.74 | 18.87 |
| OQU86453 | Sorghum | cytosol | 13.16 | 18.69 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 21.71 | 18.64 |
| EES17731 | Sorghum | nucleus | 21.05 | 18.5 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 19.41 | 17.88 |
| KXG21322 | Sorghum | nucleus | 21.05 | 17.11 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 21.05 | 17.07 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.72 | 16.89 |
| OQU77425 | Sorghum | nucleus | 20.72 | 16.76 |
| HORVU2Hr1G118840.1 | Barley | plastid | 20.39 | 16.71 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 20.39 | 16.53 |
| TraesCS1A01G070000.1 | Wheat | plastid | 13.16 | 16.46 |
| Bra001519.1-P | Field mustard | nucleus | 11.51 | 16.36 |
| Bra007376.1-P | Field mustard | cytosol | 14.8 | 16.3 |
| TraesCSU01G021700.1 | Wheat | nucleus | 19.08 | 15.89 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 17.76 | 15.84 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 18.75 | 15.62 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 18.75 | 15.62 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 20.39 | 15.31 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 22.7 | 15.03 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 22.7 | 14.87 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 22.04 | 14.69 |
| EES17735 | Sorghum | mitochondrion | 21.38 | 14.48 |
| TraesCSU01G231400.1 | Wheat | nucleus | 15.79 | 13.87 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 12.17 | 12.98 |
| EES02574 | Sorghum | nucleus | 17.11 | 11.61 |
| Bra008328.1-P | Field mustard | cytosol | 3.95 | 11.11 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.99 | 3.03 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EnsemblPlantsGene:Bra022858 | EnsemblPlants:Bra022858.1 | EnsemblPlants:Bra022858.1-P |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M4E258 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000254032A |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
AT1G66620 (E=3e-097) | seven in absentia (SINA) protein, putative
Coordinates
chrA03:+:7419202..7420504
Molecular Weight (calculated)
33789.4 Da
IEP (calculated)
5.915
GRAVY (calculated)
-0.257
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTDTNAEQV LAGEASSSHL KRQRLSSLVE EEAEGGENVG EVTGDEVTTT EVRSGMLLDL DLLDCPVCCH ALTNPIFQCD NGHIACSACC INMRNKCPSC
101: TLPIGIHRCR IMERVVEAIM VPCPNAKRGC TDKFSYGKEL AHEKECSFAL CYCPASDCNY AGLCKDLYRH YHANHTGYCE SFTCGFNADA WMHISDKILV
201: LQEGRGGPLV AVQCFEEEHG VYVTVNCIAS CAPGVSEFSY QLSYSHGDKS MSFGLGEMNR IQKVSFQTPE KDFMLVPHYF LNGRESLKMK ICIRRRGEEQ
301: EKKT
101: TLPIGIHRCR IMERVVEAIM VPCPNAKRGC TDKFSYGKEL AHEKECSFAL CYCPASDCNY AGLCKDLYRH YHANHTGYCE SFTCGFNADA WMHISDKILV
201: LQEGRGGPLV AVQCFEEEHG VYVTVNCIAS CAPGVSEFSY QLSYSHGDKS MSFGLGEMNR IQKVSFQTPE KDFMLVPHYF LNGRESLKMK ICIRRRGEEQ
301: EKKT
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.