Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G032100.1 | Wheat | nucleus | 89.22 | 90.79 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 87.93 | 88.89 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 34.48 | 56.94 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 33.19 | 54.61 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 31.47 | 51.41 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 21.34 | 49.5 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 35.78 | 48.82 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 20.26 | 37.15 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 21.77 | 35.82 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 21.34 | 35.61 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 20.91 | 35.4 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 20.69 | 35.04 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 21.34 | 33.79 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 21.12 | 33.56 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 20.91 | 33.22 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 18.97 | 31.77 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 19.83 | 31.51 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 20.69 | 31.27 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.38 | 30.77 |
| CDY11709 | Canola | nucleus | 10.56 | 29.7 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 25.0 | 28.64 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 13.15 | 27.6 |
| PGSC0003DMT400043047 | Potato | cytosol | 10.78 | 27.17 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 17.03 | 26.6 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 17.24 | 26.58 |
| CDY36209 | Canola | plastid | 11.85 | 26.07 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 19.4 | 25.79 |
| Bra004174.1-P | Field mustard | nucleus | 19.61 | 25.78 |
| Bra025434.1-P | Field mustard | nucleus | 15.3 | 25.0 |
| CDY52473 | Canola | nucleus | 15.3 | 25.0 |
| CDX99687 | Canola | nucleus | 15.09 | 24.73 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.22 | 24.54 |
| AT1G66620.1 | Thale cress | nucleus | 16.38 | 24.28 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 15.3 | 24.15 |
| Bra000425.1-P | Field mustard | nucleus | 14.66 | 24.03 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 14.01 | 23.9 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 16.81 | 23.78 |
| AT1G66630.1 | Thale cress | cytosol | 15.52 | 23.76 |
| CDY10787 | Canola | plastid | 14.66 | 23.53 |
| Bra018266.1-P | Field mustard | plastid | 14.66 | 23.53 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.05 | 23.46 |
| CDY01699 | Canola | nucleus, plastid | 14.22 | 23.4 |
| CDY12498 | Canola | nucleus | 13.58 | 23.16 |
| AT5G37890.1 | Thale cress | nucleus | 14.22 | 23.08 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 9.91 | 23.0 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 13.58 | 22.99 |
| Bra012354.1-P | Field mustard | cytosol | 13.36 | 22.79 |
| CDY25763 | Canola | nucleus | 13.36 | 22.79 |
| Bra022858.1-P | Field mustard | nucleus | 14.87 | 22.7 |
| Bra004402.1-P | Field mustard | nucleus | 15.3 | 22.4 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 14.22 | 22.22 |
| CDY47873 | Canola | nucleus | 15.3 | 21.91 |
| Bra028395.1-P | Field mustard | nucleus | 15.3 | 21.91 |
| AT1G66610.1 | Thale cress | nucleus | 17.24 | 21.86 |
| AT5G37870.1 | Thale cress | nucleus | 13.15 | 21.71 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 14.44 | 21.54 |
| CDY27008 | Canola | nucleus | 15.09 | 21.28 |
| KRH42263 | Soybean | nucleus | 14.66 | 21.25 |
| TraesCS3B01G019600.1 | Wheat | plastid | 14.44 | 21.2 |
| AT5G37900.1 | Thale cress | nucleus | 10.99 | 21.16 |
| AT5G62800.1 | Thale cress | nucleus | 15.73 | 20.98 |
| AT1G66650.1 | Thale cress | nucleus | 14.87 | 20.97 |
| Solyc03g034460.2.1 | Tomato | nucleus | 16.16 | 20.83 |
| PGSC0003DMT400043050 | Potato | nucleus | 17.03 | 20.73 |
| KRH58384 | Soybean | nucleus | 14.22 | 20.62 |
| Solyc03g042550.1.1 | Tomato | nucleus | 15.73 | 20.28 |
| AT5G37910.1 | Thale cress | nucleus | 11.85 | 19.93 |
| AT5G37930.1 | Thale cress | nucleus | 14.87 | 19.77 |
| CDY01695 | Canola | nucleus | 12.93 | 19.42 |
| Solyc03g034450.2.1 | Tomato | nucleus | 16.38 | 19.39 |
| Bra004176.1-P | Field mustard | nucleus | 13.79 | 18.99 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 14.01 | 18.57 |
| CDX96138 | Canola | nucleus | 13.58 | 18.53 |
| CDY70665 | Canola | nucleus | 12.93 | 18.52 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 13.58 | 18.48 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 12.93 | 18.35 |
| CDY36211 | Canola | nucleus | 14.01 | 18.01 |
| Bra019710.1-P | Field mustard | nucleus | 13.15 | 17.84 |
| AT1G66660.2 | Thale cress | nucleus | 13.36 | 17.82 |
| Solyc03g042520.1.1 | Tomato | nucleus | 11.85 | 17.74 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 13.36 | 16.53 |
| TraesCS1B01G152800.1 | Wheat | plastid | 14.22 | 16.22 |
| CDY01757 | Canola | cytosol | 1.72 | 15.09 |
| CDY01758 | Canola | cytosol | 9.48 | 10.07 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G052300 |
| EnsemblPlants:TraesCS3B01G052300.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3B:-:26530785..26532399
Molecular Weight (calculated)
52042.2 Da
IEP (calculated)
4.735
GRAVY (calculated)
-0.720
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGSSSSKRK AEAQGEGESS GKRLNVTMGM EHLDCSLCLK PLRPPILQCS VGHFICSYCC TSQLDSKCHL CSKETTFERC FGMEHVVESV TVACSNEMYG
101: CAEAVTYYKK EEHTEACSYA PCFCPEPGCG FAGTTKVLLE HFTTQHKCPL TTLPDSGTVS LCLQPGLHVL QCTRNSYFFL LSMASEPFGH AISVVCVEPN
201: RRKSKFTCNL SYDCITTGCC GSTNCHIRSS SLSDGLPTVY DLILPKGKVS DDANSIMLRA TINHQTISHS RSCFRGKGLT SALQQRPDTC DDDDDDDDDA
301: DYIPKSRRRS HPAKEEEVVE EDENDEDNEE EEEEEEEDER PLSLRRSHLA EEEDERPLLL RRSHPAVQRR PNTYDDDGQV EEDEEDARPV SVSRPRLRGT
401: APARGVQQRH YSDTDDDDYF PIAFRRRHVQ GTPSAPAVQE RHYFDTSDED DLPIAFRPFI RGTA
101: CAEAVTYYKK EEHTEACSYA PCFCPEPGCG FAGTTKVLLE HFTTQHKCPL TTLPDSGTVS LCLQPGLHVL QCTRNSYFFL LSMASEPFGH AISVVCVEPN
201: RRKSKFTCNL SYDCITTGCC GSTNCHIRSS SLSDGLPTVY DLILPKGKVS DDANSIMLRA TINHQTISHS RSCFRGKGLT SALQQRPDTC DDDDDDDDDA
301: DYIPKSRRRS HPAKEEEVVE EDENDEDNEE EEEEEEEDER PLSLRRSHLA EEEDERPLLL RRSHPAVQRR PNTYDDDGQV EEDEEDARPV SVSRPRLRGT
401: APARGVQQRH YSDTDDDDYF PIAFRRRHVQ GTPSAPAVQE RHYFDTSDED DLPIAFRPFI RGTA
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.