Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G050200.1 | Wheat | nucleus | 67.81 | 80.16 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 45.55 | 48.54 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 45.21 | 48.18 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 49.32 | 46.91 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 43.15 | 43.15 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 36.64 | 36.64 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 36.3 | 36.18 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 33.9 | 35.61 |
| KXG32009 | Sorghum | nucleus | 35.96 | 35.47 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 34.25 | 35.46 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 31.51 | 33.21 |
| Os01t0761900-00 | Rice | cytosol | 18.49 | 33.13 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 30.48 | 31.67 |
| Os01t0125500-00 | Rice | mitochondrion | 29.79 | 30.96 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 29.79 | 30.85 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 29.79 | 30.63 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 19.52 | 28.5 |
| CDY12498 | Canola | nucleus | 24.66 | 26.47 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 22.6 | 26.09 |
| CDY11709 | Canola | nucleus | 14.38 | 25.45 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.18 | 25.34 |
| CDY25763 | Canola | nucleus | 23.29 | 25.0 |
| Bra012354.1-P | Field mustard | cytosol | 23.29 | 25.0 |
| Bra025434.1-P | Field mustard | nucleus | 23.97 | 24.65 |
| AT1G66630.1 | Thale cress | cytosol | 25.34 | 24.42 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 25.0 | 24.25 |
| CDY36209 | Canola | plastid | 17.47 | 24.17 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 28.08 | 24.12 |
| CDY52473 | Canola | nucleus | 23.29 | 23.94 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 24.32 | 23.91 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.1 | 23.5 |
| KRH42263 | Soybean | nucleus | 25.68 | 23.44 |
| CDX99687 | Canola | nucleus | 22.6 | 23.32 |
| AT5G37910.1 | Thale cress | nucleus | 21.92 | 23.19 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.38 | 22.83 |
| KRH58384 | Soybean | nucleus | 25.0 | 22.81 |
| AT5G37870.1 | Thale cress | nucleus | 21.92 | 22.78 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.89 | 22.68 |
| CDY47873 | Canola | nucleus | 24.66 | 22.22 |
| Bra028395.1-P | Field mustard | nucleus | 24.66 | 22.22 |
| CDY01699 | Canola | nucleus, plastid | 21.23 | 21.99 |
| CDY27008 | Canola | nucleus | 24.66 | 21.88 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 24.32 | 21.65 |
| Bra000425.1-P | Field mustard | nucleus | 20.89 | 21.55 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.58 | 21.43 |
| AT1G66620.1 | Thale cress | nucleus | 22.95 | 21.41 |
| Bra022858.1-P | Field mustard | nucleus | 22.26 | 21.38 |
| CDY01695 | Canola | nucleus | 22.26 | 21.04 |
| AT5G37890.1 | Thale cress | nucleus | 20.55 | 20.98 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 21.23 | 20.88 |
| AT5G37900.1 | Thale cress | nucleus | 17.12 | 20.75 |
| Bra004174.1-P | Field mustard | nucleus | 25.0 | 20.68 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 24.66 | 20.63 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 19.18 | 20.44 |
| AT1G66650.1 | Thale cress | nucleus | 22.6 | 20.06 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.66 | 20.0 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.66 | 20.0 |
| Bra004402.1-P | Field mustard | nucleus | 21.58 | 19.87 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 18.49 | 19.85 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 31.51 | 19.83 |
| AT5G37930.1 | Thale cress | nucleus | 23.63 | 19.77 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 20.89 | 19.61 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 27.05 | 19.51 |
| Bra018266.1-P | Field mustard | plastid | 19.18 | 19.38 |
| CDY10787 | Canola | plastid | 19.18 | 19.38 |
| CDY70665 | Canola | nucleus | 21.23 | 19.14 |
| Solyc03g034450.2.1 | Tomato | nucleus | 25.68 | 19.13 |
| PGSC0003DMT400043050 | Potato | nucleus | 24.66 | 18.9 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 20.89 | 18.65 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 11.3 | 18.44 |
| Bra019710.1-P | Field mustard | nucleus | 21.58 | 18.42 |
| AT1G66610.1 | Thale cress | nucleus | 22.6 | 18.03 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 22.6 | 17.6 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.49 | 17.42 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 20.21 | 17.3 |
| AT1G66660.2 | Thale cress | nucleus | 20.55 | 17.24 |
| Bra004176.1-P | Field mustard | nucleus | 19.52 | 16.91 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 20.21 | 16.86 |
| TraesCS3B01G019600.1 | Wheat | plastid | 18.15 | 16.77 |
| AT5G62800.1 | Thale cress | nucleus | 19.86 | 16.67 |
| CDX96138 | Canola | nucleus | 19.18 | 16.47 |
| CDY36211 | Canola | nucleus | 19.86 | 16.07 |
| TraesCS1B01G152800.1 | Wheat | plastid | 20.55 | 14.74 |
| CDY01758 | Canola | cytosol | 15.41 | 10.3 |
| CDY01757 | Canola | cytosol | 1.03 | 5.66 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF35 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G033700 | EnsemblPlants:TraesCS3B01G033700.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:+:16129137..16130924
Molecular Weight (calculated)
32343.0 Da
IEP (calculated)
9.016
GRAVY (calculated)
-0.313
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWKRRERWR RRTESGDGER AREGEPRRLE KTNRSAASNG SIDLDLLDCT ICMDPLRPPV LQCTVGHVIC SSCHGSLLNK DSCHMCTATG GYNRCIALDK
101: ILESFCVSCS NAVYGCTVKT LYYKAKDHRN LCPHAPCFCP GPACSFAGTT VKLLAHLTGD HKWKSKEVKY DAKFTLPVKE GTWVLHAQGH APLFLVKFTP
201: APPFGNVASV LCVGPHATAE HRFRCCLRCS GPAIGQQKSS DFLVRSTTLS DGLQLTEYDG SLLFASSTRS ITAHIRDVVR DKHKRGMSIR LR
101: ILESFCVSCS NAVYGCTVKT LYYKAKDHRN LCPHAPCFCP GPACSFAGTT VKLLAHLTGD HKWKSKEVKY DAKFTLPVKE GTWVLHAQGH APLFLVKFTP
201: APPFGNVASV LCVGPHATAE HRFRCCLRCS GPAIGQQKSS DFLVRSTTLS DGLQLTEYDG SLLFASSTRS ITAHIRDVVR DKHKRGMSIR LR
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.