Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 51.38 | 46.43 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 58.1 | 44.55 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 41.11 | 35.86 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 51.38 | 32.1 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 33.99 | 30.61 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 33.99 | 30.5 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 35.18 | 30.38 |
| Os01t0125000-00 | Rice | nucleus | 39.92 | 29.79 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 33.2 | 29.58 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 33.99 | 29.45 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 32.81 | 29.43 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 36.36 | 29.21 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 32.41 | 29.18 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 31.23 | 28.42 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 29.64 | 27.37 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 29.64 | 27.37 |
| CDY11709 | Canola | nucleus | 17.79 | 27.27 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 29.64 | 27.08 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 21.34 | 27.0 |
| EES00387 | Sorghum | nucleus | 33.99 | 26.96 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 34.78 | 25.88 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 28.06 | 24.32 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 28.85 | 23.78 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 27.27 | 22.92 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 26.88 | 22.9 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 26.09 | 22.6 |
| CDX99687 | Canola | nucleus | 24.9 | 22.26 |
| CDY52473 | Canola | nucleus | 24.9 | 22.18 |
| Bra025434.1-P | Field mustard | nucleus | 24.9 | 22.18 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 21.34 | 21.86 |
| KRH58384 | Soybean | nucleus | 26.09 | 20.62 |
| Bra012354.1-P | Field mustard | cytosol | 22.13 | 20.59 |
| CDY25763 | Canola | nucleus | 22.13 | 20.59 |
| CDY12498 | Canola | nucleus | 22.13 | 20.59 |
| CDY36209 | Canola | plastid | 17.0 | 20.38 |
| KRH42263 | Soybean | nucleus | 25.69 | 20.31 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 37.15 | 20.26 |
| AT5G37870.1 | Thale cress | nucleus | 22.13 | 19.93 |
| AT5G37890.1 | Thale cress | nucleus | 22.13 | 19.58 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 20.95 | 19.49 |
| Bra000425.1-P | Field mustard | nucleus | 21.74 | 19.43 |
| CDY10787 | Canola | plastid | 22.13 | 19.38 |
| Bra018266.1-P | Field mustard | plastid | 22.13 | 19.38 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 20.55 | 19.33 |
| CDY01699 | Canola | nucleus, plastid | 21.34 | 19.15 |
| Bra022858.1-P | Field mustard | nucleus | 22.92 | 19.08 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 22.13 | 18.86 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 20.16 | 18.61 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.34 | 18.37 |
| AT5G37900.1 | Thale cress | nucleus | 17.39 | 18.26 |
| AT1G66620.1 | Thale cress | nucleus | 22.53 | 18.21 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.04 | 17.93 |
| Bra028395.1-P | Field mustard | nucleus | 22.53 | 17.59 |
| CDY47873 | Canola | nucleus | 22.53 | 17.59 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.83 | 17.5 |
| AT1G66630.1 | Thale cress | cytosol | 20.95 | 17.49 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.25 | 17.32 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.02 | 17.19 |
| TraesCS3B01G019600.1 | Wheat | plastid | 21.34 | 17.09 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 20.95 | 17.04 |
| AT5G37910.1 | Thale cress | nucleus | 18.58 | 17.03 |
| CDY27008 | Canola | nucleus | 22.13 | 17.02 |
| CDY01695 | Canola | nucleus | 20.55 | 16.83 |
| Bra004402.1-P | Field mustard | nucleus | 20.95 | 16.72 |
| AT1G66660.2 | Thale cress | nucleus | 22.92 | 16.67 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 22.92 | 16.62 |
| Bra004176.1-P | Field mustard | nucleus | 22.13 | 16.62 |
| CDX96138 | Canola | nucleus | 22.13 | 16.47 |
| Bra004174.1-P | Field mustard | nucleus | 22.92 | 16.43 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 20.95 | 16.16 |
| AT5G37930.1 | Thale cress | nucleus | 22.13 | 16.05 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 22.13 | 16.0 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 20.55 | 15.9 |
| CDY70665 | Canola | nucleus | 20.16 | 15.74 |
| AT1G66610.1 | Thale cress | nucleus | 22.53 | 15.57 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 20.95 | 15.54 |
| AT5G62800.1 | Thale cress | nucleus | 21.34 | 15.52 |
| AT1G66650.1 | Thale cress | nucleus | 20.16 | 15.5 |
| PGSC0003DMT400043050 | Potato | nucleus | 23.32 | 15.49 |
| CDY36211 | Canola | nucleus | 21.74 | 15.24 |
| Bra019710.1-P | Field mustard | nucleus | 20.55 | 15.2 |
| CDY01757 | Canola | cytosol | 3.16 | 15.09 |
| Solyc03g034460.2.1 | Tomato | nucleus | 20.95 | 14.72 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 21.34 | 14.4 |
| Solyc03g042550.1.1 | Tomato | nucleus | 20.16 | 14.17 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.74 | 14.03 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.41 | 12.58 |
| TraesCS1B01G152800.1 | Wheat | plastid | 20.16 | 12.53 |
| CDY01758 | Canola | cytosol | 14.23 | 8.24 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G052700 | EnsemblPlants:TraesCS3B01G052700.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:26683993..26684842
Molecular Weight (calculated)
28290.3 Da
IEP (calculated)
7.829
GRAVY (calculated)
-0.366
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDRSNSNKR KGDGEQEGRK SGCKRQNVST VMEVFDCTVC SKPLRPPIFQ CSKGNSICRH CQERLPLFER IPVQRCYIME RVVDNIFVPC KHGCSTTIAY
101: YQKEKHERQC PCGPCLCPVS GCGFVAPTTV LLDHLATVHK LPTTPMELFK PFEVPVLPGS RVLKTKYNRL FLLKMDALES YGHGVSLVCV QPETPGGNVR
201: ITVGFSCAPG HNHESKWEMG PNGVPKQCLC IVPGKETDVV ATITIEREDY EED
101: YQKEKHERQC PCGPCLCPVS GCGFVAPTTV LLDHLATVHK LPTTPMELFK PFEVPVLPGS RVLKTKYNRL FLLKMDALES YGHGVSLVCV QPETPGGNVR
201: ITVGFSCAPG HNHESKWEMG PNGVPKQCLC IVPGKETDVV ATITIEREDY EED
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.