Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G027500.1 | Wheat | plastid | 94.89 | 94.2 |
| TraesCS3D01G018300.1 | Wheat | mitochondrion | 92.7 | 78.64 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 71.53 | 72.06 |
| TraesCS3B01G019600.1 | Wheat | plastid | 55.47 | 48.1 |
| OQU86460 | Sorghum | nucleus | 42.34 | 34.73 |
| KXG32028 | Sorghum | plastid | 40.51 | 33.04 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 24.09 | 23.4 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 25.18 | 23.23 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 25.18 | 22.92 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 22.99 | 22.66 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 22.26 | 22.26 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 21.9 | 21.9 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 22.26 | 21.63 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 22.26 | 21.48 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 25.55 | 21.34 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 22.63 | 21.23 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 22.63 | 21.16 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 21.17 | 20.94 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 22.26 | 20.89 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 23.36 | 20.85 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 21.17 | 20.64 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 22.99 | 20.26 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 18.61 | 20.16 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 20.44 | 19.18 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 13.87 | 19.0 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 23.36 | 18.77 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 21.9 | 18.35 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.42 | 18.22 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 21.53 | 17.35 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 21.17 | 16.57 |
| TraesCS1B01G152800.1 | Wheat | plastid | 21.9 | 14.74 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 18.98 | 13.87 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 20.44 | 13.83 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 22.99 | 13.58 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF35 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G442300 | EnsemblPlants:TraesCS3B01G442300.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:681568606..681570529
Molecular Weight (calculated)
29537.6 Da
IEP (calculated)
7.707
GRAVY (calculated)
-0.080
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKAGADRT ATVKAESCSR KKAKVGPEAK AASSKITVTL DPKLLECSVC CSPLVAPLSQ CANGHITCFN CSSDLNYSCS LCSGPANTHC SALERILGGL
101: AVPCSFQEHG CTEMIPFTEK LAHEESCLHA PCHCPVAGCC PYPGRSLRDH INADHPTIQY TRITAGRLYP LSMRHDEPAR LVSLGSKAVF LLVVDRSIPS
201: GLTLSVIHLM SDPIEREDFK YKIQVHTQTG ILSLSGETQS VSRLRGPYQA GASLFVSDTM WSPPDSPVYL ELKC
101: AVPCSFQEHG CTEMIPFTEK LAHEESCLHA PCHCPVAGCC PYPGRSLRDH INADHPTIQY TRITAGRLYP LSMRHDEPAR LVSLGSKAVF LLVVDRSIPS
201: GLTLSVIHLM SDPIEREDFK YKIQVHTQTG ILSLSGETQS VSRLRGPYQA GASLFVSDTM WSPPDSPVYL ELKC
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.