Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G052700.1 | Wheat | nucleus | 32.1 | 51.38 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 31.36 | 43.79 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 26.91 | 38.79 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 25.43 | 36.65 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 25.43 | 36.52 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 28.15 | 36.19 |
| Os01t0125000-00 | Rice | nucleus | 29.88 | 35.69 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 24.44 | 34.86 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 21.98 | 32.48 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 21.48 | 31.75 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 15.56 | 31.5 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 21.23 | 30.5 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 21.73 | 30.03 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 20.49 | 29.86 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 21.23 | 29.45 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 21.23 | 29.45 |
| EES00387 | Sorghum | nucleus | 22.72 | 28.84 |
| CDY11709 | Canola | nucleus | 11.36 | 27.88 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 23.21 | 27.65 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.79 | 27.53 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 20.74 | 27.36 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 19.51 | 27.05 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 17.78 | 25.99 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 28.64 | 25.0 |
| CDY36209 | Canola | plastid | 12.35 | 23.7 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 17.04 | 22.92 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 16.54 | 22.56 |
| AT1G66620.1 | Thale cress | nucleus | 17.28 | 22.36 |
| CDY25763 | Canola | nucleus | 14.81 | 22.06 |
| CDY12498 | Canola | nucleus | 14.81 | 22.06 |
| AT1G66630.1 | Thale cress | cytosol | 16.3 | 21.78 |
| TraesCS3B01G018000.2 | Wheat | cytosol | 14.57 | 21.69 |
| Bra012354.1-P | Field mustard | cytosol | 14.57 | 21.69 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 14.32 | 21.56 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 15.8 | 21.55 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 15.56 | 21.43 |
| AT5G37870.1 | Thale cress | nucleus | 14.57 | 21.0 |
| CDX99687 | Canola | nucleus | 14.57 | 20.85 |
| Bra025434.1-P | Field mustard | nucleus | 14.57 | 20.77 |
| CDY52473 | Canola | nucleus | 14.57 | 20.77 |
| Bra018266.1-P | Field mustard | plastid | 14.81 | 20.76 |
| CDY10787 | Canola | plastid | 14.81 | 20.76 |
| TraesCS3B01G442300.1 | Wheat | cytosol | 13.83 | 20.44 |
| Bra022858.1-P | Field mustard | nucleus | 15.31 | 20.39 |
| Bra004174.1-P | Field mustard | nucleus | 17.28 | 19.83 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 17.04 | 19.77 |
| Bra004402.1-P | Field mustard | nucleus | 15.31 | 19.56 |
| CDY27008 | Canola | nucleus | 15.56 | 19.15 |
| CDY47873 | Canola | nucleus | 15.31 | 19.14 |
| Bra000425.1-P | Field mustard | nucleus | 13.33 | 19.08 |
| KRH42263 | Soybean | nucleus | 15.06 | 19.06 |
| KRH58384 | Soybean | nucleus | 15.06 | 19.06 |
| PGSC0003DMT400043047 | Potato | cytosol | 8.64 | 19.02 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 10.37 | 19.0 |
| CDY01757 | Canola | cytosol | 2.47 | 18.87 |
| Bra028395.1-P | Field mustard | nucleus | 15.06 | 18.83 |
| CDY01699 | Canola | nucleus, plastid | 13.09 | 18.79 |
| AT5G37900.1 | Thale cress | nucleus | 11.11 | 18.67 |
| AT5G37890.1 | Thale cress | nucleus | 13.09 | 18.53 |
| AT5G37910.1 | Thale cress | nucleus | 12.59 | 18.48 |
| CDY70665 | Canola | nucleus | 14.57 | 18.21 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 16.79 | 18.13 |
| Bra019710.1-P | Field mustard | nucleus | 15.31 | 18.13 |
| CDY01695 | Canola | nucleus | 13.83 | 18.12 |
| AT1G66660.2 | Thale cress | nucleus | 15.56 | 18.1 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 8.89 | 18.0 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 14.57 | 17.99 |
| Bra004176.1-P | Field mustard | nucleus | 14.81 | 17.8 |
| AT5G37930.1 | Thale cress | nucleus | 15.31 | 17.77 |
| TraesCS3B01G019600.1 | Wheat | plastid | 13.83 | 17.72 |
| CDX96138 | Canola | nucleus | 14.81 | 17.65 |
| Solyc03g034460.2.1 | Tomato | nucleus | 15.56 | 17.5 |
| AT1G66650.1 | Thale cress | nucleus | 14.07 | 17.33 |
| AT1G66610.1 | Thale cress | nucleus | 15.56 | 17.21 |
| TraesCS6B01G114800.1 | Wheat | nucleus | 13.09 | 17.04 |
| Solyc03g042550.1.1 | Tomato | nucleus | 15.06 | 16.94 |
| CDY36211 | Canola | nucleus | 14.32 | 16.07 |
| TraesCS3B01G185000.1 | Wheat | cytoskeleton, nucleus, plasma membrane | 12.84 | 15.9 |
| AT5G62800.1 | Thale cress | nucleus | 13.58 | 15.8 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 6.91 | 15.64 |
| TraesCS7B01G244800.1 | Wheat | cytosol, nucleus, peroxisome | 13.09 | 15.54 |
| PGSC0003DMT400043050 | Potato | nucleus | 14.57 | 15.49 |
| TraesCS2B01G151100.1 | Wheat | plasma membrane | 13.33 | 15.43 |
| Solyc03g034450.2.1 | Tomato | nucleus | 14.81 | 15.31 |
| Solyc03g042520.1.1 | Tomato | nucleus | 10.12 | 13.23 |
| TraesCS1B01G152800.1 | Wheat | plastid | 12.59 | 12.53 |
| CDY01758 | Canola | cytosol | 9.88 | 9.15 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G031100 | EnsemblPlants:TraesCS3B01G031100.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:-:14162428..14163758
Molecular Weight (calculated)
44483.0 Da
IEP (calculated)
4.590
GRAVY (calculated)
-0.590
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAKSNKRA AEARREGQSS VKRRNVNVAV DGGKSNGRQA EVRREGQSSA KTQSVNVAVD GGESNAQQAQ VRREGQSSTK MQKVTMGLDT LDCPVCSQPL
101: RPPVFQCPKG NLICSPCRDK LPESKRGAPQ RSYGVERIIE NTFVPCKHGC LTKITYYDIE EHESRCPLGP CFCPVSGCGF VGTTVPLLDH LTTLHKLPKM
201: AFKYFVPFEL PAQPCSLVLR GGYGRVFLLE VASLESLGHS VSLVCAGHKD WLGTIRCSVG FSCFEGHCQV SFLEIERSSL SNGLTTQDFC VVPKVSGGQT
301: DVMLRIMIDL LYGDDDVPEV EEDDADNSYV EGEDEDMTTK WRMAITNLGV REDDNDSDEE DGDDNDEEED DDMAITGTSR RGVTITSEKV KDDGKDDRED
401: NQNGN
101: RPPVFQCPKG NLICSPCRDK LPESKRGAPQ RSYGVERIIE NTFVPCKHGC LTKITYYDIE EHESRCPLGP CFCPVSGCGF VGTTVPLLDH LTTLHKLPKM
201: AFKYFVPFEL PAQPCSLVLR GGYGRVFLLE VASLESLGHS VSLVCAGHKD WLGTIRCSVG FSCFEGHCQV SFLEIERSSL SNGLTTQDFC VVPKVSGGQT
301: DVMLRIMIDL LYGDDDVPEV EEDDADNSYV EGEDEDMTTK WRMAITNLGV REDDNDSDEE DGDDNDEEED DDMAITGTSR RGVTITSEKV KDDGKDDRED
401: NQNGN
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.