Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96138 | Canola | nucleus | 99.41 | 98.53 |
| AT1G66660.2 | Thale cress | nucleus | 48.07 | 46.55 |
| Bra019710.1-P | Field mustard | nucleus | 39.76 | 39.18 |
| Bra012354.1-P | Field mustard | cytosol | 29.67 | 36.76 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 9.79 | 36.26 |
| Bra028395.1-P | Field mustard | nucleus | 32.64 | 33.95 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 26.41 | 33.09 |
| Bra025434.1-P | Field mustard | nucleus | 27.0 | 32.04 |
| Bra018266.1-P | Field mustard | plastid | 27.0 | 31.49 |
| Bra022858.1-P | Field mustard | nucleus | 28.19 | 31.25 |
| Bra004402.1-P | Field mustard | nucleus | 27.3 | 29.02 |
| KRH58384 | Soybean | nucleus | 27.3 | 28.75 |
| Bra000425.1-P | Field mustard | nucleus | 24.04 | 28.62 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.1 | 27.6 |
| KRH42263 | Soybean | nucleus | 26.11 | 27.5 |
| Bra004174.1-P | Field mustard | nucleus | 28.78 | 27.48 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 16.91 | 26.64 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 15.43 | 26.0 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 19.88 | 25.19 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.35 | 24.46 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 19.58 | 24.0 |
| PGSC0003DMT400043050 | Potato | nucleus | 27.0 | 23.88 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 17.8 | 23.81 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 18.69 | 23.77 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.93 | 23.33 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 19.29 | 23.13 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 19.29 | 23.05 |
| Solyc03g042550.1.1 | Tomato | nucleus | 24.33 | 22.78 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 18.99 | 22.7 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 20.18 | 22.67 |
| Solyc03g034450.2.1 | Tomato | nucleus | 26.11 | 22.45 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 18.1 | 22.26 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 17.51 | 22.18 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 16.62 | 22.13 |
| KXG32009 | Sorghum | nucleus | 19.29 | 21.96 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 17.8 | 21.9 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 17.8 | 21.9 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 17.8 | 21.9 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 18.1 | 21.63 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 17.51 | 21.53 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 17.51 | 21.45 |
| KXG32014 | Sorghum | nucleus | 13.95 | 21.36 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 20.77 | 21.15 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 21.07 | 21.13 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 17.21 | 21.09 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 18.69 | 21.07 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 18.1 | 21.03 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 18.69 | 21.0 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 17.51 | 20.92 |
| OQU78944 | Sorghum | nucleus | 20.18 | 20.86 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 18.99 | 20.85 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 18.1 | 20.82 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 16.62 | 20.82 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 17.8 | 20.55 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 16.91 | 20.5 |
| Bra003473.1-P | Field mustard | nucleus | 19.29 | 20.44 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 17.21 | 20.42 |
| EES00387 | Sorghum | nucleus | 19.29 | 20.38 |
| KXG37941 | Sorghum | cytosol | 16.91 | 20.36 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 18.99 | 20.32 |
| Bra010392.1-P | Field mustard | nucleus | 19.29 | 20.31 |
| Zm00001d041049_P001 | Maize | nucleus | 19.58 | 20.18 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 19.58 | 20.12 |
| Bra014421.1-P | Field mustard | cytosol | 18.99 | 20.0 |
| Solyc03g042520.1.1 | Tomato | nucleus | 18.4 | 20.0 |
| Bra026301.1-P | Field mustard | nucleus | 18.99 | 19.88 |
| Bra000249.1-P | Field mustard | nucleus | 18.1 | 19.87 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 18.1 | 19.87 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 17.51 | 19.87 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 17.21 | 19.86 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 16.32 | 19.86 |
| Bra016898.1-P | Field mustard | cytosol | 17.8 | 19.67 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 20.77 | 19.55 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 17.21 | 19.53 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 16.91 | 19.52 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 14.24 | 19.43 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 19.58 | 19.41 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 15.43 | 19.33 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 16.02 | 19.29 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 17.21 | 19.27 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 16.91 | 19.19 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 19.29 | 19.12 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 15.73 | 18.86 |
| Bra003315.1-P | Field mustard | cytosol, nucleus, plastid | 14.54 | 18.85 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 18.99 | 18.82 |
| TraesCSU01G045900.1 | Wheat | cytosol | 16.62 | 18.73 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 14.84 | 18.66 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 18.69 | 18.58 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 15.43 | 18.57 |
| OQU77422 | Sorghum | cytosol | 15.43 | 18.18 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 17.8 | 18.07 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 17.51 | 18.04 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 17.8 | 17.91 |
| OQU86453 | Sorghum | cytosol | 11.28 | 17.76 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 18.4 | 17.61 |
| Bra014589.1-P | Field mustard | nucleus | 15.13 | 17.47 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 18.1 | 17.23 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 18.1 | 16.35 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 18.1 | 16.27 |
| HORVU2Hr1G118840.1 | Barley | plastid | 17.8 | 16.17 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 17.8 | 16.0 |
| EES17731 | Sorghum | nucleus | 16.32 | 15.9 |
| OQU77425 | Sorghum | nucleus | 17.51 | 15.69 |
| KXG21322 | Sorghum | nucleus | 17.21 | 15.51 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 9.2 | 15.5 |
| EES17735 | Sorghum | mitochondrion | 20.47 | 15.37 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 15.43 | 15.25 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 17.8 | 14.81 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 19.88 | 14.6 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 19.58 | 14.47 |
| TraesCSU01G021700.1 | Wheat | nucleus | 15.43 | 14.25 |
| Bra007376.1-P | Field mustard | cytosol | 11.57 | 14.13 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 15.13 | 13.97 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 13.65 | 13.94 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 18.99 | 13.79 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 14.84 | 13.7 |
| TraesCSU01G231400.1 | Wheat | nucleus | 13.95 | 13.58 |
| Bra001519.1-P | Field mustard | nucleus | 8.61 | 13.55 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 15.13 | 13.35 |
| TraesCS1A01G070000.1 | Wheat | plastid | 9.2 | 12.76 |
| EES02574 | Sorghum | nucleus | 16.32 | 12.28 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 10.09 | 11.93 |
| Bra008328.1-P | Field mustard | cytosol | 2.97 | 9.26 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.59 | 2.02 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EnsemblPlantsGene:Bra004176 | EnsemblPlants:Bra004176.1 | EnsemblPlants:Bra004176.1-P |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M4CIZ2 | PFAM:PF03145 |
| PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 |
| SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI0002541502 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
AT1G66660 (E=5e-076) | seven in absentia (SINA) protein, putative
Coordinates
chrA07:-:17218764..17219870
Molecular Weight (calculated)
37893.0 Da
IEP (calculated)
4.693
GRAVY (calculated)
-0.351
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPPRNPDH RSPKRPRFPL SPPVPEEEEE EEDDEFSDVS ANDVEDRSDE SADDEEDDVE VVAVVTVAEA QSRGYLGSSS SIPSSPVKLN STEILDCPTC
101: LEPLRGPIYQ CHNGHITCSP CLPRVYKHCP VCRMPIGDIR CRAMEMVIES SAVPCRYAMY GCKETTLYGD QAHEKVCLYT RCQCPVTNCN YAGGYKEVEA
201: HARLLHSWDV EDLTPFVFNT PQIFSINLAR TSRAVFQEEK EGDMIVVQTF KRTNAGLCVT VNHIAPLSLG LPNLSCSIAK LNSFTTLRLG VMVKRIQNVR
301: EQEEPSEDFL FIPDYMLIDN HLKMQICVGS EFKYVHI
101: LEPLRGPIYQ CHNGHITCSP CLPRVYKHCP VCRMPIGDIR CRAMEMVIES SAVPCRYAMY GCKETTLYGD QAHEKVCLYT RCQCPVTNCN YAGGYKEVEA
201: HARLLHSWDV EDLTPFVFNT PQIFSINLAR TSRAVFQEEK EGDMIVVQTF KRTNAGLCVT VNHIAPLSLG LPNLSCSIAK LNSFTTLRLG VMVKRIQNVR
301: EQEEPSEDFL FIPDYMLIDN HLKMQICVGS EFKYVHI
001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.