Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G586400.1 | Wheat | nucleus | 98.08 | 98.08 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 97.53 | 97.53 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 72.05 | 93.93 |
| TraesCSU01G231400.1 | Wheat | nucleus | 31.78 | 33.53 |
| CDY12498 | Canola | nucleus | 18.36 | 24.63 |
| CDY25763 | Canola | nucleus | 18.08 | 24.26 |
| AT5G37870.1 | Thale cress | nucleus | 18.63 | 24.2 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 14.52 | 23.98 |
| Bra012354.1-P | Field mustard | cytosol | 17.81 | 23.9 |
| CDY52473 | Canola | nucleus | 18.36 | 23.59 |
| Bra025434.1-P | Field mustard | nucleus | 18.36 | 23.59 |
| KRH42263 | Soybean | nucleus | 20.55 | 23.44 |
| KRH58384 | Soybean | nucleus | 20.55 | 23.44 |
| CDX99687 | Canola | nucleus | 18.08 | 23.32 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.51 | 22.83 |
| TraesCSU01G045900.1 | Wheat | cytosol | 18.63 | 22.74 |
| AT5G37890.1 | Thale cress | nucleus | 17.81 | 22.73 |
| AT5G37910.1 | Thale cress | nucleus | 16.44 | 21.74 |
| CDY01699 | Canola | nucleus, plastid | 16.44 | 21.28 |
| CDY11709 | Canola | nucleus | 9.59 | 21.21 |
| AT5G37900.1 | Thale cress | nucleus | 13.97 | 21.16 |
| Bra000425.1-P | Field mustard | nucleus | 16.16 | 20.85 |
| Solyc03g034450.2.1 | Tomato | nucleus | 22.19 | 20.66 |
| AT1G66630.1 | Thale cress | cytosol | 16.99 | 20.46 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 15.07 | 20.45 |
| CDY10787 | Canola | plastid | 16.16 | 20.42 |
| Bra018266.1-P | Field mustard | plastid | 16.16 | 20.42 |
| Bra028395.1-P | Field mustard | nucleus | 18.08 | 20.37 |
| CDY47873 | Canola | nucleus | 18.08 | 20.37 |
| CDY27008 | Canola | nucleus | 18.36 | 20.36 |
| Solyc03g034460.2.1 | Tomato | nucleus | 20.0 | 20.28 |
| PGSC0003DMT400043050 | Potato | nucleus | 21.1 | 20.21 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.59 | 19.55 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 10.68 | 19.5 |
| TraesCSU01G019700.1 | Wheat | nucleus | 16.44 | 19.29 |
| AT5G37930.1 | Thale cress | nucleus | 18.36 | 19.2 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 15.62 | 19.19 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.9 | 19.17 |
| AT1G66650.1 | Thale cress | nucleus | 17.26 | 19.15 |
| CDY01695 | Canola | nucleus | 16.16 | 19.09 |
| Bra022858.1-P | Field mustard | nucleus | 15.89 | 19.08 |
| AT1G66620.1 | Thale cress | nucleus | 16.16 | 18.85 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.89 | 18.71 |
| CDY36209 | Canola | plastid | 10.68 | 18.48 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 14.79 | 18.37 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 16.99 | 17.77 |
| CDY70665 | Canola | nucleus | 15.62 | 17.59 |
| Bra004174.1-P | Field mustard | nucleus | 16.71 | 17.28 |
| AT1G66610.1 | Thale cress | nucleus | 17.26 | 17.21 |
| Bra004402.1-P | Field mustard | nucleus | 14.79 | 17.03 |
| Bra019710.1-P | Field mustard | nucleus | 15.89 | 16.96 |
| AT5G62800.1 | Thale cress | nucleus | 15.34 | 16.09 |
| Bra004176.1-P | Field mustard | nucleus | 14.25 | 15.43 |
| CDX96138 | Canola | nucleus | 14.25 | 15.29 |
| AT1G66660.2 | Thale cress | nucleus | 14.25 | 14.94 |
| CDY36211 | Canola | nucleus | 14.25 | 14.4 |
| CDY01757 | Canola | cytosol | 1.64 | 11.32 |
| CDY01758 | Canola | cytosol | 9.04 | 7.55 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF44 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCSU01G021700 | EnsemblPlants:TraesCSU01G021700.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:+:23530947..23532135
Molecular Weight (calculated)
41370.5 Da
IEP (calculated)
8.316
GRAVY (calculated)
-0.800
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYSGSGGGK RLRTSPSEAE GSPRRRRGSP SVYSPSPSPY RSPSPLPSPS TYRSLSHSPS PCRSWSQRPP SDDDADDLSR SRGSDDLDRH GRRPAWRPHA
101: NKELGENGRT GEFSVRIDDY DRLFTCKACR RMLSPPVYQC PFAHVTCSRC HEEVGDNRCS CCGSGNGYGR NRVVEEFLGR IRFSCRNKVH ACEAFLPHHE
201: MREHEQTCRH EPIFCPVPQC GFASRAVALT THLILRHHWD TIRFHYDENF RASALTSTIF QSRDDGELFF LDCFSEGRGI ALSMICIRPE NAREQEFVYE
301: LKTPVGNGDR RPWLQMQSTA RNTSLRHGLG EKEKVFLLVP KDLPGTEDGN VEVCIRKLGH QRDSV
101: NKELGENGRT GEFSVRIDDY DRLFTCKACR RMLSPPVYQC PFAHVTCSRC HEEVGDNRCS CCGSGNGYGR NRVVEEFLGR IRFSCRNKVH ACEAFLPHHE
201: MREHEQTCRH EPIFCPVPQC GFASRAVALT THLILRHHWD TIRFHYDENF RASALTSTIF QSRDDGELFF LDCFSEGRGI ALSMICIRPE NAREQEFVYE
301: LKTPVGNGDR RPWLQMQSTA RNTSLRHGLG EKEKVFLLVP KDLPGTEDGN VEVCIRKLGH QRDSV
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.