Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96140 | Canola | cytosol, nucleus, plastid | 96.32 | 97.42 |
| Bra022858.1-P | Field mustard | nucleus | 50.99 | 59.21 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 42.21 | 55.39 |
| Bra004402.1-P | Field mustard | nucleus | 47.59 | 53.0 |
| AT1G66630.1 | Thale cress | cytosol | 43.91 | 51.16 |
| Bra025434.1-P | Field mustard | nucleus | 36.54 | 45.42 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 11.33 | 43.96 |
| Bra018266.1-P | Field mustard | plastid | 35.69 | 43.6 |
| Bra000425.1-P | Field mustard | nucleus | 33.14 | 41.34 |
| Bra012354.1-P | Field mustard | cytosol | 31.16 | 40.44 |
| Bra028395.1-P | Field mustard | nucleus | 35.41 | 38.58 |
| Bra019710.1-P | Field mustard | nucleus | 30.88 | 31.87 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 19.26 | 31.78 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.83 | 31.67 |
| KRH42263 | Soybean | nucleus | 27.2 | 30.0 |
| KRH58384 | Soybean | nucleus | 27.2 | 30.0 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.43 | 29.0 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 20.68 | 28.97 |
| Bra004176.1-P | Field mustard | nucleus | 27.48 | 28.78 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 22.38 | 28.73 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 24.36 | 28.67 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 21.53 | 28.57 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 21.81 | 28.1 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 21.53 | 27.74 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 24.08 | 27.69 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 22.1 | 27.66 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 21.53 | 27.64 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 21.81 | 27.4 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 21.25 | 27.37 |
| PGSC0003DMT400043047 | Potato | cytosol | 14.16 | 27.17 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 21.25 | 26.98 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 22.1 | 26.9 |
| Solyc03g042550.1.1 | Tomato | nucleus | 27.2 | 26.67 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 20.68 | 26.64 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 21.25 | 26.6 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 21.25 | 26.6 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 19.83 | 26.42 |
| Solyc03g034460.2.1 | Tomato | nucleus | 26.91 | 26.39 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 20.4 | 26.28 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 20.96 | 26.24 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 26.06 | 26.14 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 20.96 | 26.06 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 21.53 | 26.03 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 21.25 | 25.6 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 19.26 | 25.56 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 21.25 | 25.08 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 24.08 | 25.07 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 20.68 | 25.0 |
| PGSC0003DMT400043050 | Potato | nucleus | 26.91 | 24.93 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 19.26 | 24.73 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 23.23 | 24.7 |
| KXG32009 | Sorghum | nucleus | 20.68 | 24.66 |
| Solyc03g042520.1.1 | Tomato | nucleus | 21.53 | 24.52 |
| KXG37941 | Sorghum | cytosol | 19.26 | 24.29 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 18.41 | 24.25 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 18.98 | 24.19 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 18.41 | 24.16 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 20.4 | 24.0 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 19.83 | 23.97 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 22.66 | 23.88 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 22.1 | 23.78 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 20.68 | 23.78 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 22.1 | 23.57 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 20.96 | 23.49 |
| Solyc03g034450.2.1 | Tomato | nucleus | 26.06 | 23.47 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 22.1 | 23.21 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 16.15 | 23.08 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 17.56 | 23.05 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 22.1 | 22.94 |
| Zm00001d041049_P001 | Maize | nucleus | 21.25 | 22.94 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 16.43 | 22.92 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 21.81 | 22.65 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 21.53 | 22.35 |
| OQU78944 | Sorghum | nucleus | 20.4 | 22.09 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 12.46 | 22.0 |
| KXG32014 | Sorghum | nucleus | 13.6 | 21.82 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 17.28 | 21.79 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.28 | 21.71 |
| EES00387 | Sorghum | nucleus | 19.26 | 21.32 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 21.53 | 21.23 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 16.71 | 21.07 |
| OQU77422 | Sorghum | cytosol | 16.71 | 20.63 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 26.35 | 20.39 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 26.35 | 20.26 |
| Bra016898.1-P | Field mustard | cytosol | 17.28 | 20.0 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 18.7 | 20.0 |
| Bra000249.1-P | Field mustard | nucleus | 17.28 | 19.87 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 25.78 | 19.61 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 16.43 | 19.53 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 17.85 | 19.27 |
| Bra003473.1-P | Field mustard | nucleus | 17.0 | 18.87 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 15.86 | 18.86 |
| TraesCSU01G045900.1 | Wheat | cytosol | 15.86 | 18.73 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 18.7 | 18.64 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 15.86 | 18.6 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 15.58 | 18.52 |
| EES17731 | Sorghum | nucleus | 18.13 | 18.5 |
| Bra010392.1-P | Field mustard | nucleus | 16.71 | 18.44 |
| Bra026301.1-P | Field mustard | nucleus | 16.71 | 18.32 |
| Bra014421.1-P | Field mustard | cytosol | 16.15 | 17.81 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 19.26 | 17.8 |
| OQU86453 | Sorghum | cytosol | 10.76 | 17.76 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 14.16 | 17.54 |
| Bra014589.1-P | Field mustard | nucleus | 14.45 | 17.47 |
| Bra003315.1-P | Field mustard | cytosol, nucleus, plastid | 12.75 | 17.31 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 19.83 | 17.28 |
| KXG21322 | Sorghum | nucleus | 17.85 | 16.84 |
| OQU77425 | Sorghum | nucleus | 17.85 | 16.76 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 17.28 | 16.71 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 17.28 | 16.71 |
| TraesCSU01G021700.1 | Wheat | nucleus | 17.28 | 16.71 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 17.0 | 16.09 |
| TraesCS1A01G070000.1 | Wheat | plastid | 11.05 | 16.05 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 17.0 | 16.0 |
| HORVU2Hr1G118840.1 | Barley | plastid | 16.71 | 15.9 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 15.3 | 15.84 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 16.71 | 15.73 |
| TraesCSU01G231400.1 | Wheat | nucleus | 15.3 | 15.61 |
| EES17735 | Sorghum | mitochondrion | 19.83 | 15.59 |
| Bra007376.1-P | Field mustard | cytosol | 10.48 | 13.41 |
| Bra001519.1-P | Field mustard | nucleus | 7.93 | 13.08 |
| EES02574 | Sorghum | nucleus | 16.15 | 12.72 |
| Bra008328.1-P | Field mustard | cytosol | 3.4 | 11.11 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 1.13 | 4.04 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EnsemblPlantsGene:Bra004174 | EnsemblPlants:Bra004174.1 | EnsemblPlants:Bra004174.1-P |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M4CIZ0 |
| PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | InterPro:SINA-like |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0002541501 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
| SEG:seg | : | : | : | : | : |
Description
AT1G66620 (E=3e-088) | seven in absentia (SINA) protein, putative
Coordinates
chrA07:-:17211959..17213134
Molecular Weight (calculated)
39497.0 Da
IEP (calculated)
4.544
GRAVY (calculated)
-0.626
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETNAAGEA SSSLRRHRKR QRLPSVENGR ETASEDGDEV IPEARSGTLL DLDLLDCPVC FQALTQHVFQ CDNGHIACSS CCRELRNKCP ACALPIGNNR
101: CRIMERVVES VTVPCPNAKH GCTEKFSYGK ELDHEKECGF ALCYCPAPDC NYAGVYKDLY THYDANHKDT STRFVCGTLH RTYLGTVSTT SVLQEYRDGP
201: LVVVQGFEVA HGLSVTVNCI APSAPGVGKF SFNLTYTLGR HTVTFGSTEM NRIQQVSLET PQSDFMSIPS YLVSPIIVKN LRICIRRLEE EAGEDEEEEE
301: EEEEEEEEEE EAGEEEEAGE EEEEEAVEVD VVNNVRRSTR EKKGNSKYQN KVK
101: CRIMERVVES VTVPCPNAKH GCTEKFSYGK ELDHEKECGF ALCYCPAPDC NYAGVYKDLY THYDANHKDT STRFVCGTLH RTYLGTVSTT SVLQEYRDGP
201: LVVVQGFEVA HGLSVTVNCI APSAPGVGKF SFNLTYTLGR HTVTFGSTEM NRIQQVSLET PQSDFMSIPS YLVSPIIVKN LRICIRRLEE EAGEDEEEEE
301: EEEEEEEEEE EAGEEEEAGE EEEEEAVEVD VVNNVRRSTR EKKGNSKYQN KVK
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.