Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G015600.1 | Wheat | cytosol | 48.6 | 35.02 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 48.6 | 35.02 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 48.13 | 34.68 |
| TraesCSU01G045900.1 | Wheat | cytosol | 48.13 | 34.45 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 48.13 | 34.22 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 48.6 | 30.5 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 25.7 | 20.68 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.63 | 19.0 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.42 | 17.93 |
| KXG32014 | Sorghum | nucleus | 18.22 | 17.73 |
| KXG32009 | Sorghum | nucleus | 23.83 | 17.23 |
| KRH58384 | Soybean | nucleus | 25.23 | 16.88 |
| KRH42263 | Soybean | nucleus | 24.77 | 16.56 |
| CDY10787 | Canola | plastid | 21.96 | 16.26 |
| Bra018266.1-P | Field mustard | plastid | 21.96 | 16.26 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 20.09 | 16.17 |
| CDY25763 | Canola | nucleus | 20.09 | 15.81 |
| KXG37941 | Sorghum | cytosol | 20.56 | 15.71 |
| KXG32011 | Sorghum | cytosol | 17.76 | 15.64 |
| Bra012354.1-P | Field mustard | cytosol | 19.63 | 15.44 |
| CDY01757 | Canola | cytosol | 3.74 | 15.09 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.62 | 15.08 |
| CDY12498 | Canola | nucleus | 19.16 | 15.07 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 22.43 | 14.68 |
| AT5G37890.1 | Thale cress | nucleus | 19.16 | 14.34 |
| OQU77422 | Sorghum | cytosol | 19.16 | 14.34 |
| KXG32010 | Sorghum | extracellular | 16.36 | 14.29 |
| OQU78944 | Sorghum | nucleus | 21.03 | 13.8 |
| AT1G66650.1 | Thale cress | nucleus | 21.03 | 13.68 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 16.82 | 13.53 |
| CDX99687 | Canola | nucleus | 17.76 | 13.43 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 16.82 | 13.38 |
| CDY52473 | Canola | nucleus | 17.76 | 13.38 |
| Bra025434.1-P | Field mustard | nucleus | 17.76 | 13.38 |
| AT5G37900.1 | Thale cress | nucleus | 14.95 | 13.28 |
| Bra022858.1-P | Field mustard | nucleus | 18.69 | 13.16 |
| KXG21322 | Sorghum | nucleus | 22.9 | 13.1 |
| AT1G66630.1 | Thale cress | cytosol | 18.22 | 12.87 |
| OQU77425 | Sorghum | nucleus | 22.43 | 12.77 |
| CDY70665 | Canola | nucleus | 19.16 | 12.65 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.29 | 12.59 |
| OQU86460 | Sorghum | nucleus | 19.63 | 12.57 |
| AT5G37870.1 | Thale cress | nucleus | 16.36 | 12.46 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 20.56 | 12.43 |
| EES17731 | Sorghum | nucleus | 20.09 | 12.43 |
| CDY01699 | Canola | nucleus, plastid | 16.36 | 12.41 |
| Bra000425.1-P | Field mustard | nucleus | 16.36 | 12.37 |
| CDY47873 | Canola | nucleus | 18.69 | 12.35 |
| Bra028395.1-P | Field mustard | nucleus | 18.69 | 12.35 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 16.82 | 12.12 |
| Bra019710.1-P | Field mustard | nucleus | 19.16 | 11.99 |
| CDY01695 | Canola | nucleus | 17.29 | 11.97 |
| AT5G37910.1 | Thale cress | nucleus | 15.42 | 11.96 |
| Solyc03g042520.1.1 | Tomato | nucleus | 17.29 | 11.94 |
| EES00387 | Sorghum | nucleus | 17.76 | 11.91 |
| CDY27008 | Canola | nucleus | 18.22 | 11.85 |
| AT1G66620.1 | Thale cress | nucleus | 17.29 | 11.82 |
| Bra004402.1-P | Field mustard | nucleus | 17.29 | 11.67 |
| Solyc03g034460.2.1 | Tomato | nucleus | 19.63 | 11.67 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 17.76 | 11.66 |
| EER92255 | Sorghum | nucleus | 16.36 | 11.59 |
| CDY11709 | Canola | nucleus | 8.88 | 11.52 |
| AT1G66660.2 | Thale cress | nucleus | 18.69 | 11.49 |
| EES02573 | Sorghum | cytosol | 18.69 | 11.46 |
| AT5G37930.1 | Thale cress | nucleus | 18.69 | 11.46 |
| Solyc03g042550.1.1 | Tomato | nucleus | 19.16 | 11.39 |
| Bra004176.1-P | Field mustard | nucleus | 17.76 | 11.28 |
| AT5G62800.1 | Thale cress | nucleus | 18.22 | 11.21 |
| CDX96138 | Canola | nucleus | 17.76 | 11.18 |
| PGSC0003DMT400043050 | Potato | nucleus | 19.63 | 11.02 |
| Solyc03g034450.2.1 | Tomato | nucleus | 20.09 | 10.97 |
| CDY36211 | Canola | nucleus | 18.22 | 10.8 |
| Bra004174.1-P | Field mustard | nucleus | 17.76 | 10.76 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 15.42 | 10.75 |
| KXG32085 | Sorghum | nucleus | 11.21 | 10.62 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 17.29 | 10.6 |
| EER97677 | Sorghum | cytosol | 14.95 | 10.6 |
| KXG32019 | Sorghum | nucleus, plastid | 18.22 | 10.48 |
| KXG19745 | Sorghum | extracellular | 4.67 | 10.42 |
| KXG32028 | Sorghum | plastid | 15.89 | 10.12 |
| AT1G66610.1 | Thale cress | nucleus | 16.82 | 9.84 |
| KXG30435 | Sorghum | cytosol | 4.67 | 9.8 |
| KXG22272 | Sorghum | cytosol | 4.67 | 9.8 |
| EES17735 | Sorghum | mitochondrion | 20.56 | 9.8 |
| OQU84285 | Sorghum | cytosol | 14.02 | 9.65 |
| EES06707 | Sorghum | nucleus | 15.42 | 9.59 |
| CDY36209 | Canola | plastid | 8.41 | 8.53 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 7.94 | 8.5 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 14.02 | 8.5 |
| EES02574 | Sorghum | nucleus | 15.42 | 7.37 |
| CDY01758 | Canola | cytosol | 8.41 | 4.12 |
Protein Annotations
| MapMan:35.2 | UniProt:A0A1W0VWE5 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR008974 | EnsemblPlants:OQU86453 |
| ProteinID:OQU86453 | ProteinID:OQU86453.1 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF72 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3003G092150 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0009DC8D3A | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr3:+:8018500..8023126
Molecular Weight (calculated)
23836.7 Da
IEP (calculated)
7.136
GRAVY (calculated)
0.001
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAATAEEH SARHLAWHPA LGKLCSNLCP ICLRVIGYNC CFALEQMIDA VKVPCSNSIF GYGCSFEEST GLLLNHFVTE HKWSPTNFSY DKPQRIPIPR
101: YSRFVLLVGE DQTLFLVVNT FAHIGNALTT VCIRPHEESG SCYSSKISAV HRPEARKGRY VFQMDPHVAS SSLHGGVQQL GRFFLLVPPD LVDESTDELT
201: INIHIEKIKC AVHH
101: YSRFVLLVGE DQTLFLVVNT FAHIGNALTT VCIRPHEESG SCYSSKISAV HRPEARKGRY VFQMDPHVAS SSLHGGVQQL GRFFLLVPPD LVDESTDELT
201: INIHIEKIKC AVHH
001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.