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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • nucleus 1
  • peroxisome 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:peroxisome
WoLF PSORT:peroxisome
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88427
EES03295
EES04804
EES12364
KXG22639
KXG29961
KXG37727
OQU78332
OQU87495
OQU89852

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65940.1 KXG37727 AT1G14830.1 21798944
AT5G65940.1 EES12364 AT2G42490.1 21798944
AT5G65940.1 OQU89852 AT2G42490.1 21798944
AT5G65940.1 EES04804 AT2G42790.1 21798944
AT5G65940.1 EER88427 AT4G01090.1 21798944
AT5G65940.1 EES03295 AT4G01090.1 21798944
AT5G65940.1 KXG22639 AT4G01090.1 21798944
AT5G65940.1 KXG29961 AT4G01090.1 21798944
AT5G65940.1 OQU78332 AT5G56630.1 21798944
AT5G65940.1 OQU87495 AT5G56630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER91893 Sorghum cytosol 80.36 80.57
Zm00001d007726_P001 Maize peroxisome 50.39 79.59
OQU84058 Sorghum mitochondrion 84.24 79.51
TraesCS1D01G194800.2 Wheat cytosol 71.32 72.44
TraesCS1B01G206000.1 Wheat cytosol 70.54 71.65
Zm00001d007746_P002 Maize peroxisome 35.14 71.58
TraesCS1A01G190800.1 Wheat plastid 71.06 70.15
HORVU1Hr1G049960.6 Barley mitochondrion 71.83 65.88
Zm00001d007740_P001 Maize peroxisome 62.79 64.46
PGSC0003DMT400004567 Potato extracellular 21.19 62.12
CDY57769 Canola peroxisome 57.36 59.52
GSMUA_Achr5P13900_001 Banana cytosol 47.55 58.97
CDY55104 Canola cytosol 56.85 58.51
Bra031802.1-P Field mustard cytosol 56.85 58.51
PGSC0003DMT400066409 Potato cytosol 20.93 58.27
Solyc01g108800.2.1 Tomato cytoskeleton, cytosol, peroxisome 56.85 58.05
GSMUA_Achr5P13870_001 Banana cytosol 59.17 57.97
Solyc01g080930.2.1 Tomato cytosol 57.36 57.96
AT2G30660.1 Thale cress peroxisome 56.59 57.94
Zm00001d007728_P001 Maize cytosol 21.19 57.75
GSMUA_Achr8P14800_001 Banana cytosol 59.17 57.68
AT5G65940.1 Thale cress peroxisome 56.33 57.67
VIT_15s0045g01170.t01 Wine grape cytosol 21.71 57.53
Solyc01g094090.2.1 Tomato cytosol 48.84 57.45
VIT_09s0002g07160.t01 Wine grape mitochondrion, peroxisome, plastid 54.78 57.3
AT2G30650.1 Thale cress peroxisome 55.81 57.14
KRH07311 Soybean nucleus 57.11 57.11
Zm00001d007732_P002 Maize extracellular 41.09 55.79
PGSC0003DMT400000043 Potato cytosol, mitochondrion, peroxisome 38.24 55.64
PGSC0003DMT400066411 Potato nucleus 20.93 55.48
PGSC0003DMT400066414 Potato cytosol 24.29 54.97
CDY31775 Canola peroxisome 54.26 54.83
PGSC0003DMT400000054 Potato cytosol 54.01 54.43
Bra018392.1-P Field mustard cytosol 52.2 54.3
Os12t0264500-02 Rice endoplasmic reticulum 71.58 54.0
Bra018395.1-P Field mustard cytosol 51.68 53.62
CDX97894 Canola peroxisome 53.49 53.35
CDY45442 Canola mitochondrion 45.48 53.17
PGSC0003DMT400066419 Potato cytosol 32.56 52.5
Bra039968.1-P Field mustard peroxisome 54.01 52.38
CDY31769 Canola peroxisome 54.26 52.37
CDY71268 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 20.16 52.35
PGSC0003DMT400004585 Potato extracellular 35.92 52.06
CDY62818 Canola peroxisome 53.75 51.87
PGSC0003DMT400066424 Potato cytosol, nucleus, plastid 9.04 51.47
Bra039975.1-P Field mustard peroxisome 50.9 51.17
CDY45439 Canola plastid 51.68 50.63
PGSC0003DMT400004521 Potato cytosol 28.94 47.86
VIT_15s0045g01190.t01 Wine grape cytosol, nucleus, peroxisome 43.15 42.71
GSMUA_Achr5P13890_001 Banana nucleus 16.54 40.0
EER91964 Sorghum mitochondrion 41.86 39.9
EES03617 Sorghum cytosol 39.02 39.43
Solyc01g108790.1.1 Tomato nucleus 15.25 33.52
KXG20277 Sorghum plastid 29.72 26.93
Protein Annotations
EnsemblPlants:KXG29172EnsemblPlantsGene:SORBI_3005G222400Gene3D:3.90.226.40GO:GO:0003674GO:GO:0003824GO:GO:0003860
GO:GO:0016787InterPro:ClpP/crotonase-like_dom_sfInterPro:HIBYL-CoA-HPANTHER:PTHR43176PFAM:PF16113ProteinID:KXG29172
ProteinID:KXG29172.1SUPFAM:SSF52096UniParc:UPI00081ABACAUniProt:A0A1B6PU31MapMan:4.2.7.4MapMan:4.2.7.6.1
Description
hypothetical protein
Coordinates
chr5:+:70906994..70913111
Molecular Weight (calculated)
43418.4 Da
IEP (calculated)
6.619
GRAVY (calculated)
-0.094
Length
387 amino acids
Sequence
(BLAST)
001: MASLPVAGCA AGGYSEQLLE EADGSTRTLI LNRPKQLNVL SSAVIKGLLR CFIVYEKDDR VKLLIMKGNG RAFCAGGDIT ECVRYIHNES WKWGADFFRD
101: LYLLNYISAT YIKPQVSLLT GIVMGGGAGV SLHGRFRVAT DNTVFAMPET ALGFLPGVGA TYFLSRLPGF YGEYVALTGA RLDGAEMLAC GLATHFVMSN
201: ILLLLEESLK NVDTSNTFAV RSTIDQFAQQ PSLKENSSLN RMEIINNCFS KRTVEEIISA LEQVDSNLSD EWVARTIQCL KKASPISLKV TLRSIREGRT
301: QTVGECLHRE YRVICHLIRG DFSRDFFEGC RAILVDKDRN PMWMPPSLEQ VHEEVVEEYF SRIDDPKWED LNLPYRRSHG RIMESKI
Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.