Factsheet for PGSC0003DMT400066419

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400023026
PGSC0003DMT400044692
PGSC0003DMT400044886
PGSC0003DMT400049429
PGSC0003DMT400051417
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	PGSC0003DMT400051417	AT1G14830.1	21798944
AT5G65940.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400023026	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400049429	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400044886	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400070848	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400095815	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066409	Potato	cytosol	53.75	92.81
PGSC0003DMT400004567	Potato	extracellular	29.17	53.03
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	75.42	47.76
PGSC0003DMT400000054	Potato	cytosol	69.58	43.49
GSMUA_Achr5P13900_001	Banana	cytosol	55.83	42.95
Zm00001d007728_P001	Maize	cytosol	24.58	41.55
Bra018392.1-P	Field mustard	cytosol	60.0	38.71
AT2G30660.1	Thale cress	peroxisome	60.83	38.62
AT5G65940.1	Thale cress	peroxisome	60.83	38.62
CDY57769	Canola	peroxisome	60.0	38.61
CDY55104	Canola	cytosol	60.42	38.56
Bra031802.1-P	Field mustard	cytosol	60.42	38.56
Bra018395.1-P	Field mustard	cytosol	58.33	37.53
CDY31775	Canola	peroxisome	58.75	36.81
Bra039975.1-P	Field mustard	peroxisome	58.33	36.36
CDY62818	Canola	peroxisome	60.42	36.16
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	55.42	35.95
CDX97894	Canola	peroxisome	57.92	35.82
AT2G30650.1	Thale cress	peroxisome	56.25	35.71
TraesCS1D01G194800.2	Wheat	cytosol	56.25	35.43
TraesCS1B01G206000.1	Wheat	cytosol	56.25	35.43
CDY31769	Canola	peroxisome	57.92	34.66
KRH07311	Soybean	nucleus	55.83	34.63
Zm00001d023779_P001	Maize	extracellular	55.42	34.46
GSMUA_Achr5P13870_001	Banana	cytosol	56.67	34.43
Bra039968.1-P	Field mustard	peroxisome	57.08	34.34
TraesCS1A01G190800.1	Wheat	plastid	55.83	34.18
GSMUA_Achr8P14800_001	Banana	cytosol	55.83	33.75
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	37.08	33.46
EER91893	Sorghum	cytosol	53.75	33.42
KXG29172	Sorghum	peroxisome	52.5	32.56
CDY45439	Canola	plastid	53.33	32.41
HORVU1Hr1G049960.6	Barley	mitochondrion	56.25	31.99
Zm00001d021132_P004	Maize	extracellular	53.75	31.93
CDY45442	Canola	mitochondrion	43.75	31.72
OQU84058	Sorghum	mitochondrion	54.17	31.71
Zm00001d007740_P001	Maize	peroxisome	46.25	29.44
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	27.92	27.92
Zm00001d007732_P002	Maize	extracellular	31.25	26.32
PGSC0003DMT400041136	Potato	cytosol	36.67	25.36
Os12t0264500-02	Rice	endoplasmic reticulum	54.17	25.34
PGSC0003DMT400054311	Potato	cytosol	16.25	24.53
PGSC0003DMT400079108	Potato	cytosol	34.58	24.13
PGSC0003DMT400020300	Potato	cytosol	38.33	23.96
Zm00001d007726_P001	Maize	peroxisome	24.17	23.67
PGSC0003DMT400057075	Potato	cytosol, plastid	36.67	22.0
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	33.33	20.46
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	23.75	20.14
PGSC0003DMT400004585	Potato	extracellular	20.0	17.98
Zm00001d007746_P002	Maize	peroxisome	14.17	17.89
PGSC0003DMT400066414	Potato	cytosol	10.83	15.2
PGSC0003DMT400004521	Potato	cytosol	13.33	13.68
PGSC0003DMT400066411	Potato	nucleus	4.58	7.53
GSMUA_Achr5P13890_001	Banana	nucleus	5.0	7.5
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	3.75	6.04
PGSC0003DMT400043000	Potato	cytosol	3.75	4.62
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	1.25	4.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400066419	EnsemblPlantsGene:PGSC0003DMG401025828	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PFAM:PF16113	PGSC:PGSC0003DMG401025828
SUPFAM:SSF52096	UniParc:UPI000294872E	UniProt:M1CFJ7	MapMan:50.3.1	:	:

Description

3-hydroxybutyryl-CoA dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG401025828]

Coordinates

chr1:+:85178936..85185788

Molecular Weight (calculated)

26463.0 Da

IEP (calculated)

7.712

GRAVY (calculated)

0.080

Length

240 amino acids

Sequence
(BLAST)

001: MAQTSSNNGG TDEVLVEETG SVRTFILNRP KKLNALSLQM ISRLTELFYA SEEDPNVKMI ILKGQGRAFC AGGDVSLCFQ NPGNWKICAN FLQKQYTLNY
101: VMATYSKTQI SILNGIVMGG GAGASIHGRF RVATEKSVFA MPEADLGHFP DVGASYFLSR LPGFFGEYAG LTGSRLDGAE MLACGLATHF VSSDVYYLNL
201: QHVMPIYNCF YRKSIRFLLL LCVNCSVCYH NGNTDMPLYM

Best Arabidopsis Sequence Match ( AT5G65940.2 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EVLQAFSI

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.