Factsheet for PGSC0003DMT400051417

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019458
PGSC0003DMT400019462
PGSC0003DMT400029685
PGSC0003DMT400059315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	PGSC0003DMT400019458	AT1G13520.1	21798944
AT1G14830.1	PGSC0003DMT400019462	AT1G13520.1	21798944
AT1G14830.1	PGSC0003DMT400059315	AT1G13520.1	21798944
AT1G14830.1	PGSC0003DMT400029685	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005310.2.1	Tomato	plastid	93.85	83.44
VIT_01s0011g05800.t01	Wine grape	cytosol	81.01	73.08
GSMUA_Achr7P11190_001	Banana	cytosol	79.75	72.06
GSMUA_Achr2P21630_001	Banana	cytosol	79.02	71.76
CDX84001	Canola	cytosol	79.57	71.66
CDY52026	Canola	cytosol	79.57	71.66
Bra016679.1-P	Field mustard	cytosol	79.39	71.5
AT1G14830.1	Thale cress	cytosol	79.39	71.5
Bra026801.1-P	Field mustard	cytosol	78.66	70.85
CDX81675	Canola	cytosol	78.66	70.85
CDY33737	Canola	cytosol	78.66	70.85
KRH41722	Soybean	endoplasmic reticulum, nucleus	78.48	70.34
Zm00001d033751_P003	Maize	plasma membrane	77.58	70.21
Zm00001d013426_P002	Maize	plasma membrane	77.58	70.21
KRH60421	Soybean	endoplasmic reticulum	78.3	70.18
KXG37727	Sorghum	cytosol, mitochondrion	77.4	69.93
KRH70357	Soybean	endoplasmic reticulum, nucleus	77.4	69.26
Os03t0713100-01	Rice	plasma membrane	76.49	69.23
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	75.59	68.52
TraesCS4B01G047700.1	Wheat	cytosol	75.59	68.52
TraesCS4A01G266600.1	Wheat	cytosol	75.59	68.52
KRH49665	Soybean	endoplasmic reticulum	76.49	68.45
PGSC0003DMT400004319	Potato	cytosol	73.42	66.12
PGSC0003DMT400028286	Potato	cytosol	70.71	63.89
HORVU4Hr1G007880.11	Barley	cytosol	72.88	63.46
PGSC0003DMT400004655	Potato	cytosol	67.99	61.64
PGSC0003DMT400000646	Potato	cytosol	64.56	58.52
PGSC0003DMT400004228	Potato	cytosol	26.58	51.94
PGSC0003DMT400088564	Potato	cytosol	6.15	27.64
PGSC0003DMT400065607	Potato	cytosol	9.22	24.88
PGSC0003DMT400064542	Potato	cytosol	25.5	20.89
PGSC0003DMT400050652	Potato	cytosol	22.42	20.16
PGSC0003DMT400095128	Potato	cytosol	15.73	19.82
PGSC0003DMT400064541	Potato	cytosol	20.43	18.46
PGSC0003DMT400072601	Potato	cytosol	20.61	18.42
PGSC0003DMT400014025	Potato	cytosol	20.07	14.4
PGSC0003DMT400064491	Potato	cytosol	9.95	13.89
PGSC0003DMT400032399	Potato	plastid	18.99	12.73
PGSC0003DMT400094747	Potato	cytosol	7.23	9.69

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	InterPro:Dynamin_central
InterPro:GED	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0005938	GO:GO:0007005	GO:GO:0007275	GO:GO:0008150	GO:GO:0009504
GO:GO:0009506	GO:GO:0009987	GO:GO:0010152	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787
InterPro:G_DYNAMIN_dom	InterPro:IPR030381	UniProt:M1BRQ1	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	EnsemblPlantsGene:PGSC0003DMG400019972	PGSC:PGSC0003DMG400019972	EnsemblPlants:PGSC0003DMT400051417	PRINTS:PR00195	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF80	SMART:SM00053	SUPFAM:SSF52540	UniParc:UPI000295A864	SEG:seg

Description

Dynamin [Source:PGSC_GENE;Acc:PGSC0003DMG400019972]

Coordinates

chr1:-:536886..542685

Molecular Weight (calculated)

61282.6 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.248

Length

553 amino acids

Sequence
(BLAST)

001: MATLESLIGL VNRIQRACTI LGDHGGEGMS LWEALPTVAV VGGQASIHFY VFFHSYLVTK FGFVPGSPKY LSSGKSSVLE SVVGRDFLPR GSAAVRQEIA
101: DETDRITGKS KQISNVPIHL SIFSPNVVDL TLIDLPGLTK VAVEGQPDSI VEDIEMMVRS YVEKPNCIIL AISPANQDIA TSDAIKLARE VDPSGERTFG
201: VITKLDLMDQ GTNALDVLEG RSYKLQHPWV GVVNRSQADI NKSVDMMAAR RKELEYFESS PEYGHLAHKM GAEYLAKLLS KHLETVIRQR IPSIIALINK
301: TIDELNAELD RIGRPVGVDG GAQLYTILEM CRAFDRIFRE HLEGGRPGGD RIYGVFDHQL PAALKKLPFD RHLSTSNVKK VISEADGYQP HLIAPEQGYR
401: RLIDGSLGFF KGPAEASVDA VHVILKELVR KSLAETQELK RFPSLQSDIA AAANDALDRF RDESRKTVSR LVEMESSYLT VEFFRKLQTE PEKLPANQTQ
501: AQEKAQAQAA SNKEELGKML DEDPALMGKR ETIAKRLELY KSARDEIDAV AWK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.