Factsheet for PGSC0003DMT400050652

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088564	Potato	cytosol	14.63	73.17
Solyc11g069980.1.1	Tomato	cytosol	91.54	70.46
PGSC0003DMT400064542	Potato	cytosol	73.17	66.67
PGSC0003DMT400065607	Potato	cytosol	21.14	63.41
PGSC0003DMT400064541	Potato	cytosol	63.09	63.4
PGSC0003DMT400072601	Potato	cytosol	63.74	63.33
AT1G60530.1	Thale cress	cytosol	30.89	63.12
PGSC0003DMT400064491	Potato	cytosol	40.33	62.63
KRH21193	Soybean	cytosol	47.32	58.67
PGSC0003DMT400095128	Potato	cytosol	40.65	56.95
CDY47217	Canola	cytosol	45.53	54.47
KRH11082	Soybean	cytosol	12.85	54.11
KRH42928	Soybean	cytosol	52.68	54.09
KRH59040	Soybean	cytosol	59.35	54.07
KRH21190	Soybean	cytosol	58.05	53.68
CDY47216	Canola	cytosol	46.5	53.16
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	47.97	52.96
CDY53048	Canola	cytosol	42.93	52.8
CDY02039	Canola	cytosol, plastid	47.64	52.41
Bra010250.1-P	Field mustard	cytosol	33.5	52.15
Bra027151.1-P	Field mustard	cytosol	56.75	51.7
CDY36456	Canola	cytosol	15.61	51.61
CDY53047	Canola	cytosol	8.13	51.55
CDY53046	Canola	cytosol	56.1	51.19
TraesCS4D01G217900.1	Wheat	cytosol	55.12	51.13
CDY23281	Canola	cytosol	32.85	51.01
AT1G60500.1	Thale cress	mitochondrion	54.8	50.37
TraesCS4B01G217700.1	Wheat	cytosol	52.03	50.16
HORVU4Hr1G061820.3	Barley	plastid	55.28	50.0
PGSC0003DMT400094747	Potato	cytosol	33.5	49.88
CDY34120	Canola	cytosol	52.85	49.69
KXG39737	Sorghum	cytosol	52.85	49.69
Bra031502.1-P	Field mustard	cytosol	52.68	49.54
CDY24536	Canola	cytosol	52.68	49.54
Bra031505.1-P	Field mustard	cytosol	46.02	49.48
TraesCS4A01G086700.1	Wheat	cytosol	53.33	49.4
Zm00001d028495_P001	Maize	cytosol	53.98	49.26
EER95148	Sorghum	cytosol	53.82	48.89
Os03t0260000-01	Rice	cytosol	53.66	48.67
TraesCS4A01G213700.1	Wheat	cytosol	45.37	47.13
TraesCS4D01G098800.1	Wheat	cytosol	52.03	46.78
Os04t0129900-01	Rice	cytosol	52.03	46.78
CDY03289	Canola	cytosol	39.84	46.4
CDY34117	Canola	cytosol	39.84	46.4
Zm00001d028497_P001	Maize	cytosol	45.85	45.19
Bra031511.1-P	Field mustard	cytosol	24.07	23.95
CDY24530	Canola	cytosol, nucleus, plasma membrane	24.55	23.82
PGSC0003DMT400051417	Potato	cytosol	20.16	22.42
PGSC0003DMT400004319	Potato	cytosol	22.11	22.15
PGSC0003DMT400004655	Potato	cytosol	21.95	22.13
PGSC0003DMT400000646	Potato	cytosol	21.79	21.97
PGSC0003DMT400028286	Potato	cytosol	21.79	21.9
PGSC0003DMT400004228	Potato	cytosol	5.69	12.37
PGSC0003DMT400014025	Potato	cytosol	14.96	11.93
PGSC0003DMT400032399	Potato	plastid	14.96	11.15

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED
InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	UniProt:M1BQM5
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	EnsemblPlantsGene:PGSC0003DMG400019673	PGSC:PGSC0003DMG400019673
EnsemblPlants:PGSC0003DMT400050652	PRINTS:PR00195	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF135
SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI00029576DA	SEG:seg	:

Description

Interferon-induced GTP-binding protein mx [Source:PGSC_GENE;Acc:PGSC0003DMG400019673]

Coordinates

chr11:+:42307609..42313785

Molecular Weight (calculated)

68927.2 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.093

Length

615 amino acids

Sequence
(BLAST)

001: MHIMNNDSSS STSECALQVV DLAVIEPQGS NNVPAPIVSS FNDRIRPLLD CVDKLRHLNI MQEGIQLPTI VVVGDQSSGK SSVLESLAGI SLPRGQGICT
101: RVPLIMRLQN HNEIELHLEY NGKLVPTNEV HIAEAIVLAT NEIAGHGKGI SNIPLSLIVK KNGVPDLTMV DLPGITRVPV HGQPDDIFEQ ISDIIMKYIT
201: PEESIILNVL SATVDFPTYK SGERTIAVVT KVDKAPEGLL EKVTSNDANI GLGYVCVKNR TGNKSYDEAR SEEARLFQTH ALLSKIDKSM VSVPVLAHKL
301: VHIQANIISK CLPDIVRKIN DKLAVNVAAL NKLPQHLSSV AEALTMFMRI LSSTKESLKK IFLRGEFDEY AEDLEMHCTA RLAEMLNDGI SATPEVFAGK
401: LWNYIETVVI KVLMHHFCNY QQLQSSTRCA VQNLTAKRKD ESINWVREII EMERLTDYTY NPEYVGTCSR LMAQQKPFME IMNDSNKRSI INLEGIGEVD
501: VGSLRKHKDV VQQAFELKMR MIAYWKIVLM RLVDHMALYT MFNLQKMVNY EIEEEIVNEL MASHGGGIER MLEETPLVLE KRLRLKKSVK LLKESKDVVA
601: KIMDRIALHI DGEKA

Best Arabidopsis Sequence Match ( AT1G60500.1 )
(BLAST)

001: MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV
101: PLVMRLQRSS SPEPEIWLEY NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV NGQPENIYEQ ISGMIMEYIE
201: PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI
301: VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI IGSAKESLLR ILVQGDFSEY PDDQNMHCTA RLADMLSQFS
401: DSLQAKPKEV AEFLMDEIKI LDECKCVGLP NFIPRSAFLA ILSQHVDGIQ DKPVEFINKI WDYIEDVLSS VTAKRSDNFP QIQSSIKRAG RNLISKIKEQ
501: SVNRVMEIVE MEKLTDYTCN PEYMTSWTQK TSAQESFIDA VVKNENIPDY FSVTGFGNVK ISHLRKYHAH LLIPAFDMKM RITSYWKIVL RRIVDNLALY
601: LQLSVKSLVN TRFQKEIVAE MVDPRDGGGV EKMLEESPLV ASKREKLQNS IKLLKESKDA VAAIVDQNC

Arabidopsis Description

DRP4CDynamin-related protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP55]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.