Factsheet for PGSC0003DMT400064491

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064541	Potato	cytosol	94.7	61.27
PGSC0003DMT400064542	Potato	cytosol	95.2	55.85
PGSC0003DMT400095128	Potato	cytosol	60.86	54.9
Solyc04g072030.1.1	Tomato	cytosol	92.93	54.52
CDY53047	Canola	cytosol	12.88	52.58
PGSC0003DMT400072601	Potato	cytosol	79.55	50.89
PGSC0003DMT400094747	Potato	cytosol	52.02	49.88
PGSC0003DMT400050652	Potato	cytosol	62.63	40.33
KRH42928	Soybean	cytosol	52.27	34.56
CDY03289	Canola	cytosol	44.44	33.33
CDY34117	Canola	cytosol	44.44	33.33
KRH21190	Soybean	cytosol	55.56	33.08
KRH59040	Soybean	cytosol	56.06	32.89
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	45.2	32.14
KRH11082	Soybean	cytosol	11.11	30.14
Zm00001d028497_P001	Maize	cytosol	45.96	29.17
Bra027151.1-P	Field mustard	cytosol	49.49	29.04
CDY53046	Canola	cytosol	48.74	28.64
TraesCS4D01G217900.1	Wheat	cytosol	47.73	28.51
EER95148	Sorghum	cytosol	47.73	27.92
TraesCS4B01G217700.1	Wheat	cytosol	44.95	27.9
Zm00001d028495_P001	Maize	cytosol	47.47	27.89
Os03t0260000-01	Rice	cytosol	47.47	27.73
HORVU4Hr1G061820.3	Barley	plastid	47.22	27.5
TraesCS4A01G086700.1	Wheat	cytosol	45.45	27.11
AT1G60500.1	Thale cress	mitochondrion	45.2	26.76
CDY34120	Canola	cytosol	43.94	26.61
CDY24536	Canola	cytosol	43.43	26.3
Bra031502.1-P	Field mustard	cytosol	43.43	26.3
Os04t0129900-01	Rice	cytosol	44.95	26.02
KXG39737	Sorghum	cytosol	42.42	25.69
TraesCS4D01G098800.1	Wheat	cytosol	43.69	25.29
CDY47216	Canola	cytosol	33.59	24.72
TraesCS4A01G213700.1	Wheat	cytosol	35.86	23.99
CDY02039	Canola	cytosol, plastid	33.59	23.79
KRH21193	Soybean	cytosol	29.29	23.39
CDY47217	Canola	cytosol	30.05	23.15
Bra031505.1-P	Field mustard	cytosol	32.58	22.55
CDY53048	Canola	cytosol	26.26	20.8
Bra010250.1-P	Field mustard	cytosol	20.71	20.76
CDY23281	Canola	cytosol	20.71	20.71
Bra031511.1-P	Field mustard	cytosol	29.8	19.09
CDY24530	Canola	cytosol, nucleus, plasma membrane	30.3	18.93
PGSC0003DMT400004228	Potato	cytosol	11.87	16.61
PGSC0003DMT400004655	Potato	cytosol	17.17	11.15
PGSC0003DMT400028286	Potato	cytosol	16.92	10.95
PGSC0003DMT400004319	Potato	cytosol	16.92	10.91
PGSC0003DMT400000646	Potato	cytosol	15.91	10.33
PGSC0003DMT400051417	Potato	cytosol	13.89	9.95
PGSC0003DMT400014025	Potato	cytosol	14.39	7.39
CDY36456	Canola	cytosol	2.78	5.91
PGSC0003DMT400032399	Potato	plastid	11.11	5.33
PGSC0003DMT400088564	Potato	cytosol	1.26	4.07
AT1G60530.1	Thale cress	cytosol	3.03	3.99
PGSC0003DMT400065607	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1240	MapMan:35.1	ncoils:Coil	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED
InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:IPR020850	UniProt:M1CCG4	PFAM:PF01031	PFAM:PF02212
EnsemblPlantsGene:PGSC0003DMG400025058	PGSC:PGSC0003DMG400025058	EnsemblPlants:PGSC0003DMT400064491	PFscan:PS51388	PANTHER:PTHR11566	PANTHER:PTHR11566:SF135
SMART:SM00302	UniParc:UPI0002949508	SEG:seg	:	:	:

Description

Interferon-induced GTP-binding protein mx [Source:PGSC_GENE;Acc:PGSC0003DMG400025058]

Coordinates

chr4:-:61371320..61373660

Molecular Weight (calculated)

45732.3 Da

IEP (calculated)

7.424

GRAVY (calculated)

-0.207

Length

396 amino acids

Sequence
(BLAST)

001: MTDEQRLFST HPLLSKIDKS MVSVPILAQK LVRIQASIIS KCLPEIVRKI NDKLALNLAE LNRLPQHLTS VAEALTAFMR ILSSSKDSLK KILLSGEFDE
101: YPDEKEMHSA ARLVEMLDQY SNELHSKNLE KVEGFLMEEV MVLQETKGIG LPNFLPRAVF FNVLQRKVKE IASSPEDFVG KLWNYLERVV IIVLMYHCEN
201: YPQLQSSTRR AAQNLIAKKK NESVDWVREI IGMEKLTDYT CNPDYLTTYS KFMAQQHMFM EIMNDHGKCS VINLEGVGEI DVGHLRKHLD VVQQAFDLKM
301: RMMAYWKIVL MRLVDSMALH IMFSIRNMIN KEMENEIIQD LMTPHGGGIE RMLIESPLVA EKRNRLKKSV KLLKESKEVV ANIMDRISLH DDHERG

Best Arabidopsis Sequence Match ( AT1G60500.1 )
(BLAST)

001: MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV
101: PLVMRLQRSS SPEPEIWLEY NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV NGQPENIYEQ ISGMIMEYIE
201: PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI
301: VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI IGSAKESLLR ILVQGDFSEY PDDQNMHCTA RLADMLSQFS
401: DSLQAKPKEV AEFLMDEIKI LDECKCVGLP NFIPRSAFLA ILSQHVDGIQ DKPVEFINKI WDYIEDVLSS VTAKRSDNFP QIQSSIKRAG RNLISKIKEQ
501: SVNRVMEIVE MEKLTDYTCN PEYMTSWTQK TSAQESFIDA VVKNENIPDY FSVTGFGNVK ISHLRKYHAH LLIPAFDMKM RITSYWKIVL RRIVDNLALY
601: LQLSVKSLVN TRFQKEIVAE MVDPRDGGGV EKMLEESPLV ASKREKLQNS IKLLKESKDA VAAIVDQNC

Arabidopsis Description

DRP4CDynamin-related protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP55]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.