Factsheet for PGSC0003DMT400028286

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g062160.1.1	Tomato	plastid	90.36	94.53
PGSC0003DMT400004319	Potato	cytosol	88.07	87.78
VIT_15s0021g00480.t01	Wine grape	cytosol	85.62	84.65
GSMUA_Achr2P18210_001	Banana	cytosol	83.5	83.63
GSMUA_Achr11P...	Banana	cytosol	83.66	83.39
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	83.17	82.63
KRH48908	Soybean	cytosol, nucleus	81.86	81.07
KRH66384	Soybean	cytosol, endoplasmic reticulum	81.05	80.26
PGSC0003DMT400004228	Potato	cytosol	36.93	79.86
GSMUA_AchrUn_...	Banana	cytosol	82.03	79.81
Os10t0567800-01	Rice	plasma membrane	80.56	79.77
AT3G60190.1	Thale cress	cytosol	80.56	79.01
Bra014507.1-P	Field mustard	cytosol	80.07	78.27
CDX89053	Canola	cytosol	80.07	78.27
CDY42672	Canola	cytosol	79.9	78.24
CDY41188	Canola	cytosol	79.9	78.24
CDX71832	Canola	cytosol	79.74	78.08
Bra007513.1-P	Field mustard	cytosol	79.74	78.08
KXG38886	Sorghum	cytosol	80.23	77.94
Zm00001d030005_P002	Maize	cytosol, mitochondrion	51.14	77.86
TraesCS1D01G216700.2	Wheat	cytosol	78.59	76.96
TraesCS1B01G227700.1	Wheat	cytosol	78.43	76.8
TraesCS1A01G213900.2	Wheat	cytosol	78.27	76.64
CDY23444	Canola	cytosol	75.98	75.24
CDY30477	Canola	cytosol	75.82	75.08
Bra037643.1-P	Field mustard	cytosol	75.49	74.76
PGSC0003DMT400004655	Potato	cytosol	74.51	74.75
Os09t0572900-01	Rice	cytosol, plasma membrane	75.82	74.12
AT2G44590.3	Thale cress	cytosol	74.02	74.02
EER98546	Sorghum	cytosol	75.16	73.72
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	74.51	72.61
PGSC0003DMT400051417	Potato	cytosol	63.89	70.71
HORVU1Hr1G054560.1	Barley	mitochondrion	78.27	69.62
PGSC0003DMT400000646	Potato	cytosol	69.12	69.34
PGSC0003DMT400065607	Potato	cytosol	9.15	27.32
PGSC0003DMT400088564	Potato	cytosol	5.23	26.02
PGSC0003DMT400064542	Potato	cytosol	26.14	23.7
PGSC0003DMT400050652	Potato	cytosol	21.9	21.79
PGSC0003DMT400064541	Potato	cytosol	21.24	21.24
PGSC0003DMT400072601	Potato	cytosol	21.24	21.0
PGSC0003DMT400095128	Potato	cytosol	15.03	20.96
PGSC0003DMT400064491	Potato	cytosol	10.95	16.92
PGSC0003DMT400014025	Potato	cytosol	20.42	16.21
PGSC0003DMT400032399	Potato	plastid	18.95	14.06
PGSC0003DMT400094747	Potato	cytosol	7.84	11.62

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850
InterPro:IPR030381	UniProt:M1AQX9	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212
EnsemblPlantsGene:PGSC0003DMG400010899	PGSC:PGSC0003DMG400010899	EnsemblPlants:PGSC0003DMT400028286	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388
PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF77	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540
UniParc:UPI000295F99E	SEG:seg	:	:	:	:

Description

Dynamin [Source:PGSC_GENE;Acc:PGSC0003DMG400010899]

Coordinates

chr10:+:9681536..9689306

Molecular Weight (calculated)

68514.2 Da

IEP (calculated)

7.053

GRAVY (calculated)

-0.339

Length

612 amino acids

Sequence
(BLAST)

001: MESLIGLVNR IQMACTALGD YGATNNSFSS LWDQLPSVAV VGGQSSGKSS VLESMVGRDF LPRGSGIVTR RPLVLQLHKT DEGQQEYAEF GHLPRTPFTD
101: FSLVQKEIQD ETDRITGKTR QISPVPIHLS IYSPNVVNLT LIDLPGLTKV AVEEQPESVV KDIEDMVRSY VEKPNCIILA ISPANQDIAT SDAIKLSREV
201: DPTGERTFGV LTKLDLMDKG TNALDVLEGR AYRLQQPWVG IVNRSQADIN KNVDMIYARR KEREYFASSP DYGHLASKMG SEYLAKLLSK HLESVIRAKI
301: PGIISVINKS IDELESEMDH LGRPISVDAG AQLYTILELC RAFDKIFKEH LDGGRPGGYR IYGVFDNQLP AALRKLPFDR YLSMQNVRKI VSEADGYQPH
401: LIAPEQGYRR LIEGALNYFR GPAEASVDAV HVVLKELVRK SVGECQELKR FPSLQSKIAA ASYEALEKYR EEGRKTVLRL VDMEANYLTV DFFRKLPQEV
501: EKGGNPATTP AVDRYAEGHF RRIASNVSSY INMVTDTLRN TIPKAVVYCQ VKEAKQSLLN YFYTQIGKKE GKDLGELLDE DPALMGKREQ CAKSLQLYKK
601: ARDEIESISL VR

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.